Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HPT10_RS18435 Genome accession   NZ_CP053705
Coordinates   3978048..3978644 (-) Length   198 a.a.
NCBI ID   WP_003087237.1    Uniprot ID   Q9I3H9
Organism   Pseudomonas aeruginosa strain PAC6     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3973048..3983644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPT10_RS30380 - 3973442..3973591 (-) 150 Protein_3657 hypothetical protein -
  HPT10_RS18415 (HPT10_18420) - 3973684..3975267 (+) 1584 WP_023436051.1 NAD(P)/FAD-dependent oxidoreductase -
  HPT10_RS18420 (HPT10_18425) - 3975264..3976151 (+) 888 WP_003087246.1 SDR family oxidoreductase -
  HPT10_RS18425 (HPT10_18430) - 3976225..3976764 (+) 540 WP_033941969.1 CbrC family protein -
  HPT10_RS18430 (HPT10_18435) - 3976777..3977925 (-) 1149 WP_003111078.1 acyl-CoA dehydrogenase family protein -
  HPT10_RS18435 (HPT10_18440) recR 3978048..3978644 (-) 597 WP_003087237.1 recombination mediator RecR Machinery gene
  HPT10_RS18440 (HPT10_18445) - 3978723..3979049 (-) 327 WP_003087236.1 YbaB/EbfC family nucleoid-associated protein -
  HPT10_RS18445 (HPT10_18450) dnaX 3979095..3981152 (-) 2058 WP_031693284.1 DNA polymerase III subunit gamma/tau -
  HPT10_RS18450 (HPT10_18455) - 3981189..3982055 (+) 867 WP_171889428.1 ABC transporter substrate-binding protein -
  HPT10_RS18455 (HPT10_18460) - 3982231..3983313 (-) 1083 WP_031693285.1 type I restriction endonuclease -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21173.42 Da        Isoelectric Point: 6.0063

>NTDB_id=393458 HPT10_RS18435 WP_003087237.1 3978048..3978644(-) (recR) [Pseudomonas aeruginosa strain PAC6]
MSFSPLIRQLIESLRILPGVGQKSAQRMALMLLERDRSGGLKLAQALTAAMEGVGHCRQCRTLSEEELCPQCADPRRDDS
LLCVVEGPLDVFAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPELEARIRDGAFSEVILATNPTVEGEATAHYIAQLLA
GRGLTLSRIAHGVPLGGELELVDGGTLAHALAGRRPIS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=393458 HPT10_RS18435 WP_003087237.1 3978048..3978644(-) (recR) [Pseudomonas aeruginosa strain PAC6]
ATGAGTTTCAGCCCGCTGATCCGCCAACTGATCGAGTCCCTGCGCATTCTTCCCGGTGTCGGGCAGAAGTCGGCCCAGCG
CATGGCGCTGATGCTGCTGGAGCGCGATCGCAGCGGCGGCCTGAAGCTGGCCCAGGCGTTGACCGCCGCGATGGAAGGGG
TCGGTCATTGCCGGCAGTGCCGTACCCTCAGCGAGGAGGAGCTGTGCCCGCAGTGCGCCGACCCGCGACGCGACGACTCG
CTGCTCTGCGTGGTGGAAGGCCCGCTGGACGTATTCGCGGTGGAGCAGACCGGCTACCGCGGCCGCTATTTCGTGCTCAA
GGGACACCTGTCGCCGCTCGACGGCCTGGGGCCGGAGGCGATCGGCATTCCCGAACTGGAAGCGCGGATCAGGGACGGAG
CCTTCAGCGAGGTGATCCTCGCCACCAACCCCACCGTCGAAGGCGAGGCCACCGCCCACTATATCGCCCAGCTACTGGCC
GGCCGCGGCCTGACCTTGTCGCGTATCGCCCATGGCGTGCCGCTGGGCGGCGAGCTGGAGCTGGTCGATGGCGGCACCTT
GGCCCACGCCCTGGCCGGACGGCGGCCGATCTCCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5Z2V

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.241

100

0.485
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

98.99

0.48