Detailed information NTG0039345

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ALIDE_RS17205
• Genome accession: NC_014910
• Coordinates: 3602800..3603924 (+)
• Length: 374 a.a.
• NCBI ID: WP_013520251.1
• Uniprot ID: A0A858ZWX9
• Organism: Alicycliphilus denitrificans BC
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3597800..3608924

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ALIDE_RS17180 (Alide_3446)	-	3598295..3598609 (+)	315	WP_013520246.1	BON domain-containing protein	-
ALIDE_RS17185 (Alide_3447)	coaD	3598765..3599253 (-)	489	WP_013520247.1	pantetheine-phosphate adenylyltransferase	-
ALIDE_RS17190 (Alide_3448)	rsmD	3599381..3599971 (-)	591	WP_013520248.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
ALIDE_RS17195 (Alide_3449)	-	3599968..3601326 (-)	1359	WP_013520249.1	M16 family metallopeptidase	-
ALIDE_RS17200 (Alide_3450)	-	3601340..3602770 (-)	1431	WP_013520250.1	M16 family metallopeptidase	-
ALIDE_RS17205 (Alide_3451)	pilA	3602800..3603924 (+)	1125	WP_013520251.1	signal recognition particle-docking protein FtsY	Machinery gene
ALIDE_RS17210 (Alide_3452)	-	3603938..3604891 (-)	954	WP_013520252.1	LysR family transcriptional regulator	-
ALIDE_RS17215 (Alide_3453)	-	3605010..3605948 (+)	939	WP_013520253.1	dihydrodipicolinate synthase family protein	-
ALIDE_RS17220 (Alide_3454)	-	3605980..3606945 (+)	966	WP_013520254.1	Bug family tripartite tricarboxylate transporter substrate binding protein	-
ALIDE_RS17225 (Alide_3455)	-	3606935..3607639 (+)	705	WP_013520255.1	SDR family NAD(P)-dependent oxidoreductase	-
ALIDE_RS17230 (Alide_3456)	-	3607665..3608831 (+)	1167	WP_013520256.1	mandelate racemase/muconate lactonizing enzyme family protein	-

Sequence

Protein

• Length: 374 a.a.
• Molecular weight: 38982.53 Da
• Isoelectric Point: 5.9996

>NTDB_id=39345 ALIDE_RS17205 WP_013520251.1 3602800..3603924(+) (pilA) [Alicycliphilus denitrificans BC]
MFSFFKKKSPSPAEPSSAPVPDAASAPAADAPTGGGALGWLRKSFGAQDAAAPQAAPAADEAPPAVPEPAPKPEGTRQGW
MERLKSGLRKTGGSIATVFTGTQINDALYEELEDALLMADTGVKATQHLLADLRRRVKEAKATEPAAVKALLADALADLL
RPLEKPLVIGAHQPTVIMVAGVNGAGKTTSIGKLTRHLADHGESVLLAAADTFRAAAREQLGVWATRNTVEIISQEGGDP
AAVSFDAVTAGRARGKDVVLVDTAGRLPTQLHLMEELKKIKRVVTKADATAPHEVLLVIDGNTGQNALAQVRAFDDALSL
TGLIVTKLDGTAKGGVLAAIAQERPVPVYFIGVGEKVEDLETFDAREFAQALLA

Nucleotide

• Length: 1125 bp

>NTDB_id=39345 ALIDE_RS17205 WP_013520251.1 3602800..3603924(+) (pilA) [Alicycliphilus denitrificans BC]
ATGTTCAGTTTTTTCAAGAAGAAATCCCCCTCCCCCGCCGAGCCGTCCAGCGCGCCGGTGCCGGATGCCGCCAGCGCCCC
CGCGGCCGACGCGCCCACGGGCGGCGGCGCGCTCGGCTGGCTGCGCAAGTCCTTCGGCGCGCAGGACGCCGCCGCACCGC
AGGCCGCGCCTGCGGCGGACGAGGCCCCGCCCGCCGTGCCCGAGCCCGCCCCCAAGCCCGAAGGCACGCGCCAGGGCTGG
ATGGAGCGCCTCAAGTCCGGCCTGCGCAAGACCGGCGGCAGCATCGCCACCGTCTTCACGGGCACGCAGATCAACGACGC
GCTGTACGAGGAGCTCGAGGATGCCCTGCTCATGGCCGACACCGGCGTGAAGGCCACGCAGCACCTGCTGGCCGACCTCA
GGCGCCGCGTGAAGGAGGCCAAGGCCACCGAGCCCGCCGCCGTCAAGGCCCTGCTGGCCGACGCGCTGGCCGACCTGCTG
CGCCCGCTGGAAAAGCCCCTGGTCATCGGCGCGCATCAGCCCACCGTGATCATGGTGGCCGGCGTGAACGGCGCGGGCAA
GACCACCTCCATCGGCAAGCTCACCAGGCACCTGGCCGACCACGGCGAGAGCGTGCTGCTGGCCGCGGCCGACACCTTCC
GCGCCGCGGCGCGCGAGCAGCTCGGCGTCTGGGCCACGCGCAACACGGTGGAGATCATCAGCCAGGAAGGGGGCGACCCC
GCCGCCGTGAGCTTCGACGCCGTCACCGCCGGCCGCGCGCGCGGCAAGGACGTGGTGCTGGTGGACACGGCCGGGCGCCT
GCCCACGCAGCTGCACCTGATGGAGGAGCTCAAGAAGATCAAGCGCGTCGTGACCAAGGCCGACGCCACGGCCCCGCACG
AGGTGCTGCTGGTGATCGACGGCAACACCGGCCAGAACGCCCTGGCCCAGGTGCGCGCGTTCGACGACGCGCTCTCGCTC
ACCGGCCTCATCGTCACCAAGCTCGACGGCACGGCCAAGGGCGGCGTGCTGGCCGCCATCGCGCAGGAGCGGCCCGTGCC
CGTCTACTTCATCGGCGTGGGCGAGAAGGTGGAAGACCTGGAGACCTTCGACGCGCGCGAGTTCGCGCAGGCGCTGCTGG
CCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (93-156)

• SRP54-type protein, GTPase domain (SRP54) (174-373)

3D structure

• AlphaFold DB: A0A858ZWX9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	50	100	0.556