Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   HPT10_RS09625 Genome accession   NZ_CP053705
Coordinates   2043754..2044083 (+) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PAC6     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2038754..2049083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPT10_RS09610 (HPT10_09610) - 2038783..2039801 (+) 1019 Protein_1907 glycosyltransferase family 4 protein -
  HPT10_RS09615 (HPT10_09615) - 2039879..2041001 (+) 1123 Protein_1908 IS3 family transposase -
  HPT10_RS09620 (HPT10_09620) - 2041566..2043563 (+) 1998 WP_010895647.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  HPT10_RS09625 (HPT10_09625) comEA/comE1 2043754..2044083 (+) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  HPT10_RS09635 (HPT10_09635) - 2044300..2045496 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  HPT10_RS09640 (HPT10_09640) uvrB 2045683..2047695 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=393433 HPT10_RS09625 WP_003091430.1 2043754..2044083(+) (comEA/comE1) [Pseudomonas aeruginosa strain PAC6]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=393433 HPT10_RS09625 WP_003091430.1 2043754..2044083(+) (comEA/comE1) [Pseudomonas aeruginosa strain PAC6]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385