Detailed information NTG0393428

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HPT10_RS07105
• Genome accession: NZ_CP053705
• Coordinates: 1501736..1502740 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PAC6
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1496736..1507740

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPT10_RS07075 (HPT10_07075)	fghA	1496830..1497681 (+)	852	WP_009876912.1	S-formylglutathione hydrolase	-
HPT10_RS07080 (HPT10_07080)	ispF	1497752..1498225 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HPT10_RS07085 (HPT10_07085)	truD	1498222..1499288 (+)	1067	Protein_1405	tRNA pseudouridine(13) synthase TruD	-
HPT10_RS07090 (HPT10_07090)	surE	1499276..1500025 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
HPT10_RS07095 (HPT10_07095)	-	1500058..1500692 (+)	635	Protein_1407	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
HPT10_RS07100 (HPT10_07100)	-	1500738..1501631 (+)	894	WP_023089397.1	peptidoglycan DD-metalloendopeptidase family protein	-
HPT10_RS07105 (HPT10_07105)	rpoS	1501736..1502740 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
HPT10_RS07110 (HPT10_07110)	fdxA	1503167..1503490 (-)	324	WP_003092272.1	ferredoxin FdxA	-
HPT10_RS07115 (HPT10_07115)	mutS	1503557..1506136 (-)	2580	WP_080985344.1	DNA mismatch repair protein MutS	-
HPT10_RS07120 (HPT10_07120)	-	1506396..1507410 (+)	1015	Protein_1412	IS3 family transposase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=393428 HPT10_RS07105 WP_003113871.1 1501736..1502740(+) (rpoS) [Pseudomonas aeruginosa strain PAC6]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=393428 HPT10_RS07105 WP_003113871.1 1501736..1502740(+) (rpoS) [Pseudomonas aeruginosa strain PAC6]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGATCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGACCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCTTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653