Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   GB930_RS19535 Genome accession   NZ_CP045311
Coordinates   4295928..4297367 (+) Length   479 a.a.
NCBI ID   WP_010635929.1    Uniprot ID   -
Organism   Aeromonas dhakensis strain Aer_OnIF1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4290928..4302367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GB930_RS19505 (GB930_19545) mlaF 4291505..4292305 (-) 801 WP_242762018.1 phospholipid ABC transporter ATP-binding protein MlaF -
  GB930_RS19510 (GB930_19550) - 4292513..4293508 (+) 996 WP_242762019.1 KpsF/GutQ family sugar-phosphate isomerase -
  GB930_RS19515 (GB930_19555) kdsC 4293508..4294062 (+) 555 WP_017766397.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  GB930_RS19520 (GB930_19560) lptC 4294059..4294619 (+) 561 WP_010635927.1 LPS export ABC transporter periplasmic protein LptC -
  GB930_RS19525 (GB930_19565) lptA 4294606..4295133 (+) 528 WP_010635928.1 lipopolysaccharide transport periplasmic protein LptA -
  GB930_RS19530 (GB930_19570) lptB 4295137..4295862 (+) 726 WP_005305964.1 LPS export ABC transporter ATP-binding protein -
  GB930_RS19535 (GB930_19575) rpoN/rpoN1 4295928..4297367 (+) 1440 WP_010635929.1 RNA polymerase factor sigma-54 Machinery gene
  GB930_RS19540 (GB930_19580) hpf 4297389..4297676 (+) 288 WP_005305957.1 ribosome hibernation promoting factor -
  GB930_RS19545 (GB930_19585) ptsN 4297679..4298125 (+) 447 WP_005305951.1 PTS IIA-like nitrogen regulatory protein PtsN -
  GB930_RS19550 (GB930_19590) rapZ 4298168..4299034 (+) 867 WP_005305946.1 RNase adapter RapZ -
  GB930_RS19555 (GB930_19595) npr 4299055..4299327 (+) 273 WP_005305943.1 PTS phosphocarrier protein NPr -
  GB930_RS19560 (GB930_19600) - 4299343..4301247 (-) 1905 WP_195879286.1 PRD domain-containing protein -
  GB930_RS19565 (GB930_19605) - 4301352..4302092 (-) 741 WP_017784942.1 KDGP aldolase family protein -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53848.82 Da        Isoelectric Point: 4.3584

>NTDB_id=393395 GB930_RS19535 WP_010635929.1 4295928..4297367(+) (rpoN/rpoN1) [Aeromonas dhakensis strain Aer_OnIF1]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENDVQETSPVDQVDVSQLDSSDAMAQDQMP
DELPVDTTWEEVYSAGTAQSAGPIHDGEDSIYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVSLED
IQAAVSSEDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLGQYSPDLPWLNEAREVILEHMDLLGNRDYRTLARK
TKLKENDLKEVLDLIQQLEPRPGNGVIQSESQYVIPDVSVVKKGNKWVVELNPDSAPRIRVNETYAAMARQARTSQDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=393395 GB930_RS19535 WP_010635929.1 4295928..4297367(+) (rpoN/rpoN1) [Aeromonas dhakensis strain Aer_OnIF1]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACTCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGACAACAACCCCTTGCTGGAGCAAGAGGAAAACGACG
TTCAGGAGACCAGCCCGGTCGACCAGGTGGACGTCAGCCAGCTCGATTCCAGCGATGCCATGGCCCAGGACCAGATGCCG
GACGAACTGCCGGTGGATACCACCTGGGAAGAGGTCTACTCGGCCGGCACGGCCCAGAGCGCAGGCCCCATCCATGACGG
GGAAGACAGCATCTATCAGGGTGAGACCACCGAGAACCTGCAGGACTACCTGTTGTGGCAGATGCGCTTGACCCCGTTCA
GCGACGTGGATGCCGCCATCGCCCTCGCCATAATAGATGCTATCGACGAATCCGGTTATCTGACGGTGTCGCTTGAGGAT
ATTCAGGCGGCGGTGAGCAGCGAGGATGTCGAGGTGGAACTCGATGAAGTGGAGGCCGTGCTCAAGCGGGTGCAGCATTT
CGATCCGGTCGGCATCGCCGCCCGCTCGGTGCAGGAGTGCCTGCTGATCCAGCTGGGCCAGTACTCCCCTGACTTGCCCT
GGCTCAACGAAGCCAGGGAGGTGATCCTCGAGCACATGGATCTGCTCGGCAACCGCGATTACCGCACCCTGGCCCGCAAG
ACCAAGCTGAAGGAGAACGACCTCAAGGAGGTGCTGGATCTCATTCAGCAGCTGGAGCCGCGGCCCGGTAATGGCGTCAT
CCAGAGCGAATCCCAGTACGTGATCCCGGATGTTTCCGTGGTCAAGAAGGGCAACAAGTGGGTGGTCGAGCTCAACCCGG
ACTCGGCCCCGCGCATTCGGGTCAACGAAACCTATGCCGCCATGGCCCGTCAGGCGCGCACCAGTCAGGATACCCAGTTC
ATCCGCTCCCACCTGCAGGAAGCCAAGTGGTTCATCAAGAGTCTGGAGAGCCGCAACGACACCCTGCTCAAGGTGGCCAG
CTGCATCGTCGAGCAGCAGCAGGGCTTCTTCGAATACGGTGAAGAGGCCATGAAACCTATGGTGCTCAACGACATCGCCG
AAGCGGTGGAGATGCACGAGTCGACCATCTCGCGGGTGACCACCCAGAAGTACATGCACACGCCGCGCGGCATCTTCGAA
CTGAAGTTTTTTTTCTCCAGCCATGTGAACACCGAGGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTCATCAA
GAAGCTGGTCACGGCGGAGAATCCCGCCAAGCCGCTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.866

100

0.486

Multiple sequence alignment