Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   HPC60_RS10000 Genome accession   NZ_CP053671
Coordinates   2008551..2010329 (+) Length   592 a.a.
NCBI ID   WP_023189053.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain G121     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2003551..2015329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPC60_RS09980 (HPC60_04725) - 2003638..2005311 (-) 1674 WP_179107687.1 polysaccharide biosynthesis protein -
  HPC60_RS09985 (HPC60_04730) - 2005522..2006972 (+) 1451 Protein_1977 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase -
  HPC60_RS09990 (HPC60_04735) - 2007051..2007311 (-) 261 WP_179107688.1 hypothetical protein -
  HPC60_RS09995 (HPC60_04740) adhP 2007332..2008355 (-) 1024 Protein_1979 alcohol dehydrogenase AdhP -
  HPC60_RS10000 (HPC60_04745) recQ 2008551..2010329 (+) 1779 WP_023189053.1 DNA helicase RecQ Machinery gene
  HPC60_RS10005 (HPC60_04750) yjeM 2010365..2011891 (-) 1527 WP_023189054.1 glutamate/gamma-aminobutyrate family transporter YjeM -
  HPC60_RS10010 (HPC60_04755) pepT 2012171..2013412 (-) 1242 WP_023189055.1 peptidase T -
  HPC60_RS10015 (HPC60_04760) - 2013441..2014238 (-) 798 WP_023189056.1 DUF1803 domain-containing protein -
  HPC60_RS10020 (HPC60_04765) - 2014238..2015182 (-) 945 WP_003130319.1 manganese-dependent inorganic pyrophosphatase -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 66881.82 Da        Isoelectric Point: 6.3316

>NTDB_id=393370 HPC60_RS10000 WP_023189053.1 2008551..2010329(+) (recQ) [Lactococcus lactis subsp. lactis strain G121]
MNLEAKLKEIFGYDNFRNGQKQIIEQVLDGQATLGILPTGAGKSICYQLPALIQPGLTLVISPLISLMKDQVDQLNIAGI
PATFINSTLEDSESYQRMRQVENGEIKLLFVAPERFSLDYFNAFLQKLPIDLVAIDEAHCISQWGHDFRPSYVDFASHLQ
YLPTNPTVLALTATATPKVADDIQKLLSISPSHTIKTGFLRENLRFEVVKGMDKRTFLKNYLKNQESEAAGIIYASTRKE
VEEICEWLNHNHFKAVRYHAGLSEQERQINQELFLFDEVPIMVATNAFGMGINKPNVRFVIHYALPATIESYYQEAGRAG
RDGLESDAILLFSPNDLRIRNFLIEQGEGDEAHKEHEYEKLRQMQAYTSAETCLQRYILQYFGDEGEDCKKCSNCLDERE
LLDITIDAQKVLSCVVRMGERFGKTAVAQVLIGSKNKNIAKWNFESLSTFGIMKNHSQKTVGELIDFLSAESYLNITSGK
FPLLLISAQGLKVLKGQIKVYRKASLIIESKTKISHHFDEECFASIRALRLELAKEEGVPPFMIFSDSALKEMAQVLPDS
PSKFLQISGVGPVKLEKYGRLFIDKISEYKKS

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=393370 HPC60_RS10000 WP_023189053.1 2008551..2010329(+) (recQ) [Lactococcus lactis subsp. lactis strain G121]
ATGAATTTAGAAGCTAAATTAAAAGAAATTTTTGGTTATGACAATTTCCGAAATGGTCAGAAACAAATTATTGAACAAGT
CCTAGATGGACAAGCCACTCTTGGTATTTTACCCACAGGAGCTGGAAAATCAATCTGCTATCAGTTACCAGCTCTTATTC
AACCAGGGCTTACTCTCGTAATCTCCCCACTTATTAGCTTGATGAAAGATCAAGTCGACCAGCTGAATATTGCCGGAATT
CCAGCAACATTTATTAACTCTACCTTAGAGGATTCCGAATCTTATCAAAGAATGCGACAGGTTGAAAATGGCGAAATCAA
GCTTCTTTTTGTAGCACCAGAGCGTTTTTCATTAGACTATTTCAATGCCTTTTTACAAAAACTTCCAATTGATTTAGTTG
CCATAGACGAAGCACACTGCATTTCACAATGGGGGCACGATTTCAGACCCAGTTATGTCGATTTTGCCTCTCATCTCCAA
TATTTACCAACAAATCCTACCGTCTTAGCCCTTACGGCTACTGCGACACCAAAAGTTGCAGATGATATTCAAAAACTTCT
TTCAATTTCCCCTAGTCATACTATTAAAACCGGTTTTCTTAGAGAAAACTTACGTTTTGAAGTAGTCAAAGGGATGGATA
AGAGAACTTTTCTTAAAAATTATCTTAAAAATCAAGAAAGTGAGGCTGCTGGAATTATCTATGCCAGCACTCGTAAAGAA
GTTGAAGAAATTTGTGAATGGCTCAACCATAATCATTTCAAAGCCGTTCGTTACCATGCTGGACTGAGCGAACAGGAACG
TCAAATAAATCAAGAACTTTTTCTCTTTGACGAAGTACCGATAATGGTTGCCACTAATGCTTTTGGCATGGGAATCAATA
AACCAAATGTTCGATTTGTGATTCATTATGCCCTTCCCGCAACAATTGAAAGTTATTATCAAGAAGCTGGGCGAGCAGGA
CGGGACGGGCTTGAATCTGATGCTATCCTCCTTTTTTCACCAAATGATTTACGAATTCGTAATTTCTTGATTGAGCAAGG
TGAAGGTGATGAAGCGCACAAGGAACATGAATACGAAAAGCTTCGACAAATGCAAGCATACACAAGTGCCGAAACCTGTT
TGCAACGCTATATCTTGCAATATTTTGGTGATGAAGGTGAAGATTGTAAAAAGTGTAGTAATTGTCTTGATGAAAGAGAA
CTTCTCGATATTACAATTGATGCTCAAAAAGTCCTATCTTGTGTCGTCCGAATGGGTGAACGTTTTGGTAAGACGGCCGT
AGCACAAGTTTTGATTGGTTCTAAAAATAAAAATATTGCAAAATGGAATTTTGAATCTCTATCGACTTTTGGAATTATGA
AAAACCATTCCCAAAAAACCGTGGGTGAATTAATCGATTTTCTATCTGCTGAAAGTTATTTAAACATTACATCAGGTAAA
TTCCCACTTCTCCTTATTTCAGCCCAAGGATTAAAAGTCCTCAAAGGACAAATCAAAGTTTATCGCAAAGCTAGCTTAAT
TATTGAATCGAAAACAAAAATCTCTCATCATTTTGATGAAGAATGTTTTGCAAGTATTCGTGCACTTCGACTTGAACTAG
CCAAGGAAGAAGGCGTCCCTCCTTTCATGATTTTTTCTGATAGTGCCCTTAAAGAAATGGCTCAAGTTCTGCCGGATAGT
CCAAGTAAATTTTTACAAATTTCTGGTGTCGGACCTGTTAAACTCGAAAAATATGGAAGGCTTTTTATCGACAAAATATC
TGAATATAAAAAAAGCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(19-179)

RQC domain (RQC)

(399-503)

Helicase conserved C-terminal domain (Helicase_C)

(214-322)

RecQ zinc-binding (RecQ_Zn_bind)

(335-396)

HRDC domain (HRDC)

(520-584)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

51.107

99.155

0.507