Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   HPC60_RS09665 Genome accession   NZ_CP053671
Coordinates   1938115..1938786 (-) Length   223 a.a.
NCBI ID   WP_003132782.1    Uniprot ID   Q9CET7
Organism   Lactococcus lactis subsp. lactis strain G121     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1933115..1943786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPC60_RS09640 (HPC60_04385) pheA 1933420..1934259 (-) 840 WP_023188548.1 prephenate dehydratase -
  HPC60_RS09645 (HPC60_04390) - 1934261..1934749 (-) 489 WP_023188547.1 shikimate kinase -
  HPC60_RS09650 (HPC60_04395) aroA 1934773..1936065 (-) 1293 WP_023188546.1 3-phosphoshikimate 1-carboxyvinyltransferase -
  HPC60_RS09655 (HPC60_04400) - 1936186..1937250 (-) 1065 WP_010906116.1 prephenate dehydrogenase -
  HPC60_RS09660 (HPC60_04405) - 1937253..1938128 (-) 876 WP_023188545.1 HAMP domain-containing sensor histidine kinase -
  HPC60_RS09665 (HPC60_04410) braR 1938115..1938786 (-) 672 WP_003132782.1 response regulator transcription factor Regulator
  HPC60_RS09670 (HPC60_04415) - 1938789..1939853 (-) 1065 WP_023188544.1 VanZ family protein -
  HPC60_RS09675 (HPC60_04420) - 1940034..1942036 (-) 2003 Protein_1915 ABC transporter permease -
  HPC60_RS09680 (HPC60_04425) - 1942029..1942808 (-) 780 WP_012898329.1 ABC transporter ATP-binding protein -
  HPC60_RS09685 (HPC60_04430) - 1942823..1942966 (-) 144 WP_014570691.1 hypothetical protein -
  HPC60_RS09690 (HPC60_04435) - 1942997..1943356 (-) 360 WP_025016977.1 YxeA family protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 25510.44 Da        Isoelectric Point: 4.8093

>NTDB_id=393365 HPC60_RS09665 WP_003132782.1 1938115..1938786(-) (braR) [Lactococcus lactis subsp. lactis strain G121]
MTKIFIVEDDEIIVKAIKIALEKEFQVRSVSNFRAVKQEIMEFEADLVLMDIGLPFYSGFYWTNELRKLSQIPIIFISSA
SDDMNQVTAMNQGADDFVTKPFSLEILNAKIKALLRRSYSFSGIEKLEFAGYVLSENTLISTQEGEREEIELTSSENKIL
TLLFRGNGEVVTKEKILQELWQTDEFIDANTLNVKMTRLRKKLGEIGFDKHIMTKRGSGYALV

Nucleotide


Download         Length: 672 bp        

>NTDB_id=393365 HPC60_RS09665 WP_003132782.1 1938115..1938786(-) (braR) [Lactococcus lactis subsp. lactis strain G121]
ATGACTAAAATATTTATTGTAGAAGATGATGAAATTATTGTGAAAGCAATTAAGATTGCCTTAGAAAAAGAATTTCAAGT
CAGAAGTGTTTCCAATTTTCGAGCAGTAAAACAAGAAATTATGGAATTTGAAGCAGATTTAGTATTAATGGATATTGGGC
TACCATTTTATAGTGGTTTTTATTGGACAAATGAATTAAGAAAACTTTCCCAAATTCCTATTATCTTTATTTCTTCGGCA
TCGGATGATATGAATCAAGTAACCGCCATGAATCAAGGAGCTGATGATTTTGTAACTAAGCCATTTTCATTAGAAATTTT
AAATGCAAAAATAAAAGCTTTACTGCGCAGAAGTTATTCTTTTTCAGGGATTGAAAAGTTAGAATTTGCTGGTTATGTTT
TATCTGAAAATACTTTGATTTCAACTCAAGAAGGTGAACGCGAAGAAATTGAGCTAACAAGTTCTGAAAATAAAATTTTA
ACTCTTCTTTTTCGTGGAAATGGTGAAGTGGTGACCAAGGAAAAAATTCTACAAGAGTTGTGGCAAACAGATGAATTTAT
TGATGCAAATACTTTAAATGTAAAAATGACTCGTTTACGCAAAAAACTTGGTGAAATTGGCTTTGATAAGCATATTATGA
CAAAAAGAGGAAGTGGTTATGCTCTGGTTTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(148-222)

Response regulator receiver domain (Response_reg)

(4-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CET7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.441

99.552

0.413

Multiple sequence alignment