Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   GCS73_RS07995 Genome accession   NZ_CP045308
Coordinates   1748008..1748343 (+) Length   111 a.a.
NCBI ID   WP_012979073.1    Uniprot ID   -
Organism   Legionella longbeachae strain B41211CHC     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1743008..1753343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GCS73_RS07970 (GCS73_07905) acpP 1743662..1743910 (+) 249 WP_003631752.1 acyl carrier protein -
  GCS73_RS07975 (GCS73_07910) fabF 1744165..1745403 (+) 1239 WP_012979070.1 beta-ketoacyl-ACP synthase II -
  GCS73_RS07980 (GCS73_07915) mltG 1745404..1746402 (+) 999 WP_012979071.1 endolytic transglycosylase MltG -
  GCS73_RS07985 (GCS73_07920) tmk 1746404..1747042 (+) 639 WP_003631741.1 dTMP kinase -
  GCS73_RS07990 (GCS73_07925) - 1747039..1747953 (+) 915 WP_012979072.1 DNA polymerase III subunit delta' C-terminal domain-containing protein -
  GCS73_RS07995 (GCS73_07930) pilZ 1748008..1748343 (+) 336 WP_012979073.1 PilZ domain-containing protein Machinery gene
  GCS73_RS08000 (GCS73_07935) - 1748421..1749206 (+) 786 WP_003631738.1 TatD family hydrolase -
  GCS73_RS08005 (GCS73_07940) - 1749206..1750303 (+) 1098 WP_012979074.1 anhydro-N-acetylmuramic acid kinase -
  GCS73_RS08010 (GCS73_07945) - 1751061..1752359 (+) 1299 WP_003631736.1 MFS transporter -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12245.02 Da        Isoelectric Point: 6.2110

>NTDB_id=393354 GCS73_RS07995 WP_012979073.1 1748008..1748343(+) (pilZ) [Legionella longbeachae strain B41211CHC]
MDKHQINCIFPNESALYAAYMPFVKHGGIFIRTNHKFEFGAIVSLSIKLMEEDESYEVGGKVVWITPQGAQGNKIPGIGV
QFVGENSSNLCNKIETYLAGMLKSSQTTDTI

Nucleotide


Download         Length: 336 bp        

>NTDB_id=393354 GCS73_RS07995 WP_012979073.1 1748008..1748343(+) (pilZ) [Legionella longbeachae strain B41211CHC]
ATGGATAAACATCAGATCAACTGTATATTTCCTAATGAATCAGCGCTGTATGCAGCTTATATGCCCTTTGTTAAACATGG
TGGAATATTTATTCGCACGAACCACAAGTTTGAGTTTGGTGCAATAGTGAGCTTATCTATAAAACTAATGGAAGAGGATG
AGTCATACGAAGTCGGTGGAAAAGTGGTATGGATTACACCTCAAGGTGCTCAAGGTAATAAGATTCCTGGAATAGGGGTA
CAGTTTGTAGGAGAAAATAGCAGTAATTTGTGCAATAAAATAGAGACCTATTTAGCAGGCATGTTAAAATCATCCCAGAC
AACAGATACAATTTAG

Domains

Predicted by InterproScan.

PilZ domain (PilZ)

(12-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

69.811

95.495

0.667
  pilZ Legionella pneumophila strain ERS1305867

69.811

95.495

0.667

Multiple sequence alignment