Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   HPC60_RS06185 Genome accession   NZ_CP053671
Coordinates   1234634..1235689 (-) Length   351 a.a.
NCBI ID   WP_179107503.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain G121     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1229634..1240689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPC60_RS06170 (HPC60_00900) trmFO 1231334..1232677 (+) 1344 WP_025017071.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  HPC60_RS06175 (HPC60_00905) xerS 1232722..1233792 (-) 1071 WP_003131037.1 tyrosine recombinase XerS Machinery gene
  HPC60_RS06180 (HPC60_00910) - 1234263..1234550 (-) 288 WP_058208181.1 hypothetical protein -
  HPC60_RS06185 (HPC60_00915) xerS 1234634..1235689 (-) 1056 WP_179107503.1 tyrosine recombinase XerS Machinery gene
  HPC60_RS06190 (HPC60_00920) - 1236939..1237334 (-) 396 WP_179107504.1 hypothetical protein -
  HPC60_RS06195 (HPC60_00925) - 1237349..1239238 (-) 1890 WP_179107505.1 heavy metal translocating P-type ATPase -
  HPC60_RS06200 (HPC60_00930) - 1239327..1240106 (+) 780 WP_058208011.1 MerR family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 40536.19 Da        Isoelectric Point: 9.5810

>NTDB_id=393348 HPC60_RS06185 WP_179107503.1 1234634..1235689(-) (xerS) [Lactococcus lactis subsp. lactis strain G121]
MSENHGYRYNVNKLMLEFPYYVNEFIQSKDTVPLSIASIYSYCLEFRKYLKWMNASNITNHDNINEITLKEMENVSKREL
EEFVLHERLRLESKCGSNTHTSALNRTIAAIKSLYNYLCEQTEDSNGNTYMTRNVSRLIHIRKKSETLHYRAAQLEGKLF
LGDETKAFLEYVENDYEKSISNRAKTSFKKNKIRDLAILSLFLSSGLRCAELVGINLNDLNLETGKVSVMRKEGKKDVVP
IAHFSHRYITDYFEARSSIDTEVQALFITDYNQKIRKISNASINKLVAKYSAAYKVRVTPHTLRHTFATRLYNVSHSQVL
VSNQLGHSSTKPTELYTHIVSAEAKDALRKL

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=393348 HPC60_RS06185 WP_179107503.1 1234634..1235689(-) (xerS) [Lactococcus lactis subsp. lactis strain G121]
ATGTCAGAAAATCATGGTTATCGTTATAATGTAAATAAACTCATGCTTGAGTTTCCCTACTACGTCAATGAGTTTATCCA
GTCTAAGGACACCGTACCGCTGAGCATTGCCTCTATTTACTCTTACTGCTTAGAATTTAGAAAATACTTGAAATGGATGA
ATGCTAGTAATATAACTAACCATGATAACATCAATGAGATTACATTGAAAGAAATGGAAAATGTATCAAAACGGGAGCTA
GAAGAGTTTGTTCTTCATGAACGTTTACGTTTAGAATCAAAATGCGGTTCTAATACACATACATCAGCATTAAATCGCAC
CATTGCAGCGATTAAAAGCCTATACAACTATCTGTGTGAACAAACCGAAGATAGTAATGGTAATACGTACATGACTAGAA
ATGTTAGCCGTTTAATTCATATCCGAAAAAAAAGCGAAACCTTGCATTACCGTGCGGCTCAACTTGAAGGGAAACTATTT
TTAGGAGACGAAACTAAAGCATTTTTAGAGTATGTTGAAAATGACTATGAAAAGTCTATCAGTAACCGTGCGAAAACAAG
TTTTAAAAAAAATAAAATCAGGGATTTAGCTATATTAAGTCTTTTTTTATCTTCTGGATTACGTTGTGCGGAACTTGTAG
GGATCAATCTCAATGATTTAAACCTTGAAACTGGGAAAGTGAGTGTGATGCGAAAAGAAGGAAAAAAAGATGTTGTTCCA
ATTGCCCACTTTTCACACAGATATATAACTGATTATTTTGAGGCAAGAAGTAGCATAGATACTGAAGTTCAAGCCTTATT
CATCACAGATTACAACCAAAAAATAAGAAAAATATCAAATGCTTCGATAAATAAGCTAGTAGCGAAGTATTCAGCAGCTT
ATAAAGTACGAGTGACACCTCATACACTAAGGCATACATTCGCAACAAGACTTTATAATGTCAGTCACTCCCAAGTCCTT
GTCAGCAATCAACTAGGCCATTCCTCAACTAAACCTACTGAGTTATATACCCACATCGTCAGTGCTGAAGCTAAAGATGC
GTTGAGAAAGTTATGA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(175-339)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

45.739

100

0.459