Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   HPC60_RS02495 Genome accession   NZ_CP053671
Coordinates   481307..482023 (-) Length   238 a.a.
NCBI ID   WP_179107858.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain G121     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 476307..487023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPC60_RS02480 (HPC60_10360) cdaA 478000..478878 (+) 879 WP_003131542.1 diadenylate cyclase CdaA -
  HPC60_RS02485 (HPC60_10365) - 478868..479827 (+) 960 WP_012897245.1 YbbR-like domain-containing protein -
  HPC60_RS02490 (HPC60_10370) glmM 479873..481231 (+) 1359 WP_003131539.1 phosphoglucosamine mutase -
  HPC60_RS02495 (HPC60_10375) treR 481307..482023 (-) 717 WP_179107858.1 trehalose operon repressor Regulator
  HPC60_RS02500 (HPC60_10380) - 482134..482619 (+) 486 WP_012897247.1 glucose PTS transporter subunit IIA -
  HPC60_RS02505 (HPC60_10385) - 482756..484321 (+) 1566 WP_179107859.1 PTS transporter subunit EIIC -
  HPC60_RS02510 (HPC60_10390) - 484389..486698 (+) 2310 WP_003131533.1 glycoside hydrolase family 65 protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27879.54 Da        Isoelectric Point: 6.4168

>NTDB_id=393330 HPC60_RS02495 WP_179107858.1 481307..482023(-) (treR) [Lactococcus lactis subsp. lactis strain G121]
MKKYEVILQDLEKKIFNDIYKTNDILPSENELSANYESSRSTVRQALKILEEKGLIQRRHGYGSIILAHDRLLFPISGLT
SYKELQTSMGFHSETEVIRFERLEINPKLSETTGFAVGEHAISILRRRKVDGKFSILDWDLFLEKYSEGLTPEHAKISTY
DYLEDTLGLDIAYAQKEVTIDFACEDDFKYLDLNPKDHHVVSVKSHVYLADNTLFQYTESRHQVDRFRFTEFARRQKR

Nucleotide


Download         Length: 717 bp        

>NTDB_id=393330 HPC60_RS02495 WP_179107858.1 481307..482023(-) (treR) [Lactococcus lactis subsp. lactis strain G121]
ATGAAGAAATATGAAGTGATTTTGCAAGATTTAGAAAAAAAGATTTTTAACGATATCTATAAAACGAACGATATTCTTCC
AAGTGAAAATGAGCTCTCTGCTAATTACGAGAGCAGTCGTTCAACAGTCAGACAGGCTTTAAAAATTTTAGAAGAGAAAG
GGCTTATTCAAAGACGACATGGCTATGGTAGCATTATCCTCGCTCACGATAGGCTCCTTTTCCCTATCTCTGGCTTAACT
TCATACAAAGAACTACAAACCTCTATGGGTTTCCATAGTGAAACTGAGGTCATTCGATTTGAAAGACTTGAAATTAACCC
TAAACTTTCAGAAACAACTGGTTTTGCCGTTGGTGAACACGCCATAAGTATTCTCAGAAGGCGCAAAGTAGATGGCAAAT
TTTCAATTTTAGATTGGGATTTATTTTTAGAAAAATATTCCGAAGGTTTAACTCCAGAACATGCTAAAATTTCAACCTAT
GACTACTTAGAAGATACTCTAGGGCTTGATATTGCCTATGCTCAAAAGGAAGTCACGATTGATTTTGCCTGCGAAGATGA
CTTTAAATATCTTGACTTAAATCCCAAAGACCATCATGTCGTGTCTGTCAAATCTCATGTTTATCTTGCTGATAATACTC
TTTTTCAGTATACTGAATCTCGACATCAAGTCGACCGCTTTCGTTTCACAGAATTTGCCAGACGACAAAAAAGATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(4-64)

UTRA domain (UTRA)

(89-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

46.835

99.58

0.466