Detailed information
Bioinformatically predicted
Overview
| Name | comB/nlmE | Type | Regulator |
| Locus tag | HPC60_RS00485 | Genome accession | NZ_CP053671 |
| Coordinates | 87734..87952 (+) | Length | 72 a.a. |
| NCBI ID | WP_010905100.1 | Uniprot ID | - |
| Organism | Lactococcus lactis subsp. lactis strain G121 | ||
| Function | transport of ComC (predicted from homology) Competence regulation |
||
Genomic Context
Location: 82734..92952
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPC60_RS13880 | - | 83820..84443 (+) | 624 | WP_223848590.1 | hypothetical protein | - |
| HPC60_RS13885 | - | 84738..85238 (+) | 501 | WP_223848591.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| HPC60_RS00465 (HPC60_08330) | - | 85332..85457 (+) | 126 | WP_021214955.1 | lactococcin family bacteriocin | - |
| HPC60_RS00470 (HPC60_08335) | - | 85783..86151 (+) | 369 | WP_223848592.1 | transporter | - |
| HPC60_RS00475 (HPC60_08340) | - | 86190..86846 (+) | 657 | WP_021214956.1 | CPBP family intramembrane glutamic endopeptidase | - |
| HPC60_RS00480 (HPC60_13815) | - | 87240..87392 (-) | 153 | WP_010905099.1 | hypothetical protein | - |
| HPC60_RS00485 (HPC60_08355) | comB/nlmE | 87734..87952 (+) | 219 | WP_010905100.1 | hypothetical protein | Regulator |
| HPC60_RS00490 (HPC60_08360) | - | 88046..88183 (+) | 138 | WP_021214958.1 | lactococcin family bacteriocin | - |
| HPC60_RS00495 (HPC60_08365) | - | 88377..88907 (+) | 531 | WP_223848593.1 | CPBP family intramembrane glutamic endopeptidase | - |
| HPC60_RS00500 (HPC60_08370) | - | 89333..89785 (+) | 453 | WP_023189490.1 | hypothetical protein | - |
| HPC60_RS14485 (HPC60_08375) | - | 89996..90154 (-) | 159 | WP_162182124.1 | hypothetical protein | - |
| HPC60_RS00510 (HPC60_08380) | - | 90109..90657 (-) | 549 | WP_025016993.1 | hypothetical protein | - |
| HPC60_RS00515 (HPC60_08385) | - | 90966..91145 (-) | 180 | WP_023163573.1 | hypothetical protein | - |
| HPC60_RS00520 (HPC60_08390) | - | 91166..91345 (-) | 180 | WP_023163574.1 | lactococcin family bacteriocin | - |
| HPC60_RS00525 (HPC60_08395) | - | 91619..91717 (+) | 99 | WP_223848594.1 | lactococcin family bacteriocin | - |
| HPC60_RS00530 (HPC60_08400) | - | 91779..92053 (+) | 275 | Protein_98 | hypothetical protein | - |
| HPC60_RS00535 (HPC60_08405) | - | 92248..92430 (+) | 183 | WP_023163576.1 | hypothetical protein | - |
| HPC60_RS00540 (HPC60_08410) | - | 92432..92686 (+) | 255 | WP_023189493.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 72 a.a. Molecular weight: 8231.78 Da Isoelectric Point: 10.5176
>NTDB_id=393317 HPC60_RS00485 WP_010905100.1 87734..87952(+) (comB/nlmE) [Lactococcus lactis subsp. lactis strain G121]
MKLTGIFLLFLIFKSFPTIFKEENAYKVSATTAINAKDLPNIRYGLQGKTVTIIGKKTYFNYFLDKIMGRTS
MKLTGIFLLFLIFKSFPTIFKEENAYKVSATTAINAKDLPNIRYGLQGKTVTIIGKKTYFNYFLDKIMGRTS
Nucleotide
Download Length: 219 bp
>NTDB_id=393317 HPC60_RS00485 WP_010905100.1 87734..87952(+) (comB/nlmE) [Lactococcus lactis subsp. lactis strain G121]
ATGAAATTGACGGGTATATTTCTTTTATTTTTAATTTTTAAATCTTTTCCTACTATCTTTAAAGAGGAAAATGCTTATAA
AGTTTCTGCGACAACTGCTATCAATGCAAAAGACCTCCCAAATATAAGGTATGGCTTGCAAGGAAAAACGGTGACCATTA
TTGGAAAGAAAACTTATTTCAATTACTTTTTAGATAAAATTATGGGGAGGACTTCATAA
ATGAAATTGACGGGTATATTTCTTTTATTTTTAATTTTTAAATCTTTTCCTACTATCTTTAAAGAGGAAAATGCTTATAA
AGTTTCTGCGACAACTGCTATCAATGCAAAAGACCTCCCAAATATAAGGTATGGCTTGCAAGGAAAAACGGTGACCATTA
TTGGAAAGAAAACTTATTTCAATTACTTTTTAGATAAAATTATGGGGAGGACTTCATAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB/nlmE | Streptococcus mutans UA159 |
46.429 |
77.778 |
0.361 |