Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   HPC60_RS00345 Genome accession   NZ_CP053671
Coordinates   57474..58229 (+) Length   251 a.a.
NCBI ID   WP_003132217.1    Uniprot ID   Q9CJD9
Organism   Lactococcus lactis subsp. lactis strain G121     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 52474..63229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPC60_RS00315 (HPC60_08180) - 52535..52966 (+) 432 WP_223848589.1 GNAT family N-acetyltransferase -
  HPC60_RS00320 (HPC60_08185) - 53060..53302 (+) 243 WP_023189466.1 TM2 domain-containing protein -
  HPC60_RS00325 (HPC60_08190) - 53376..55004 (-) 1629 WP_017863946.1 SulP family inorganic anion transporter -
  HPC60_RS00330 (HPC60_08195) - 55214..55735 (+) 522 WP_021723185.1 GNAT family N-acetyltransferase -
  HPC60_RS00340 (HPC60_08205) - 56200..57375 (+) 1176 WP_012896922.1 pyridoxal phosphate-dependent aminotransferase -
  HPC60_RS00345 (HPC60_08210) recO 57474..58229 (+) 756 WP_003132217.1 DNA repair protein RecO Machinery gene
  HPC60_RS00350 (HPC60_08215) - 58343..58516 (+) 174 WP_021214949.1 helix-turn-helix transcriptional regulator -
  HPC60_RS00355 (HPC60_08220) lpdA 58587..60005 (-) 1419 WP_023189469.1 dihydrolipoyl dehydrogenase -
  HPC60_RS00360 (HPC60_08225) - 60199..61788 (-) 1590 WP_023189470.1 2-oxo acid dehydrogenase subunit E2 -
  HPC60_RS00365 (HPC60_08230) - 61781..62736 (-) 956 Protein_64 alpha-ketoacid dehydrogenase subunit beta -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 28703.89 Da        Isoelectric Point: 5.9537

>NTDB_id=393316 HPC60_RS00345 WP_003132217.1 57474..58229(+) (recO) [Lactococcus lactis subsp. lactis strain G121]
MRDAETQGLVLYSRNYKEKDKLVKIFTESFGKRMFFVKNFGKSPYASSLQAFTDGKLTATINDGGFSFIEDVSEVVVYKN
ISSDIFINAHASYIISLADAAISDNQYDPGLYGFLKRSLELLDQGFDMEVVTNIFELQVLHRFGISLNFSECAFCHKTVG
PFDFSYKFSGCLCPQHFDEDLRRSHLDPNVIYLVNLFQEISLDELKKISIKADMKLKIRQFIDGLYDEYVGIHLKSKKFL
DGMSGWADIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=393316 HPC60_RS00345 WP_003132217.1 57474..58229(+) (recO) [Lactococcus lactis subsp. lactis strain G121]
ATGCGTGATGCCGAAACTCAAGGTCTAGTGCTTTACAGTCGTAATTACAAAGAAAAAGATAAATTGGTCAAAATTTTTAC
AGAGTCTTTTGGTAAACGGATGTTTTTTGTCAAAAATTTTGGAAAATCGCCTTATGCTAGTTCCTTACAAGCTTTTACTG
ATGGAAAATTGACGGCAACGATTAATGACGGGGGATTTTCTTTTATCGAGGATGTCAGTGAAGTGGTCGTTTATAAAAAT
ATTAGTTCAGATATTTTCATCAATGCTCATGCTTCTTATATCATAAGTTTGGCTGATGCGGCCATTTCTGATAATCAATA
CGACCCAGGGCTTTATGGATTTCTAAAGCGAAGTTTAGAGCTTTTAGATCAAGGATTTGATATGGAAGTCGTGACTAACA
TTTTTGAATTACAAGTTCTTCATCGTTTTGGGATTTCTTTGAACTTCTCAGAATGTGCATTTTGTCATAAAACCGTTGGA
CCCTTTGATTTTTCTTATAAATTTAGTGGCTGCCTTTGTCCCCAACATTTTGATGAAGATTTACGACGGAGTCATCTTGA
CCCAAATGTGATTTATTTGGTCAATCTTTTTCAAGAAATATCTTTAGATGAACTCAAAAAAATCTCGATAAAAGCAGATA
TGAAACTAAAAATTCGTCAATTTATTGATGGGCTATATGATGAATATGTCGGAATTCATCTCAAATCCAAAAAATTCTTG
GACGGAATGTCTGGTTGGGCAGATATTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CJD9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

54.472

98.008

0.534