Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ALIDE_RS01460 Genome accession   NC_014910
Coordinates   326367..327749 (+) Length   460 a.a.
NCBI ID   WP_013517209.1    Uniprot ID   A0A858ZP71
Organism   Alicycliphilus denitrificans BC     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 321367..332749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ALIDE_RS01440 (Alide_0289) lplT 321789..323066 (-) 1278 WP_013517205.1 lysophospholipid transporter LplT -
  ALIDE_RS01445 (Alide_0290) alr 323210..324304 (+) 1095 WP_013517206.1 alanine racemase -
  ALIDE_RS01450 (Alide_0291) - 324565..325542 (+) 978 WP_238530129.1 cytochrome-c peroxidase -
  ALIDE_RS01455 (Alide_0292) - 325622..326236 (-) 615 WP_013517208.1 glutathione S-transferase family protein -
  ALIDE_RS01460 (Alide_0293) radA 326367..327749 (+) 1383 WP_013517209.1 DNA repair protein RadA Machinery gene
  ALIDE_RS01465 (Alide_0294) - 327753..328739 (-) 987 WP_013517210.1 Bug family tripartite tricarboxylate transporter substrate binding protein -
  ALIDE_RS01470 (Alide_0295) - 328764..330188 (-) 1425 WP_013517211.1 amidase -
  ALIDE_RS01475 (Alide_0296) - 330354..330770 (+) 417 WP_013517212.1 hypothetical protein -
  ALIDE_RS01480 (Alide_0297) - 330815..331753 (+) 939 WP_013517213.1 branched-chain amino acid transaminase -
  ALIDE_RS01485 (Alide_0298) - 331761..331967 (+) 207 WP_013517214.1 zinc-finger domain-containing protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 47840.27 Da        Isoelectric Point: 7.1208

>NTDB_id=39331 ALIDE_RS01460 WP_013517209.1 326367..327749(+) (radA) [Alicycliphilus denitrificans BC]
MAKDKTLYSCSECGASSPRWLGKCPGCGAWNTLIETVPDAGPGKNRLSGAGQYAGLAQAQSVMPLAAIEATEVARTPSGI
EELDRVLGGGVVEGGVVLIGGDPGIGKSTLLLQAMDALQRVGLPTLYVTGEESGAQVALRSRRLGLEASQVNVLAEIQLE
KILATIEATQPAVAVIDSIQTIYSDQLTSAPGSVAQVRECAAHLTRLAKATGIAVVLVGHVTKEGALAGPRVLEHMVDTV
LYFEGDTHSSFRLVRAIKNRFGAVNEIGVFAMTERGLKGVANPSAIFLSQHSEPVPGSCVLVTLEGTRPLLVEIQALVDG
GGPSPRRLSVGLERDRLAMLLAVLHRHAGVACADQDVFVNAVGGVRISEPAADLAVMLSITSSLRGRALPKGFIAFGEVG
LAGEVRPAPRGQERLKEAAKLGFTVAVVPKANAPKKPIPGLEIHAVERVDEAMAAVRGLG

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=39331 ALIDE_RS01460 WP_013517209.1 326367..327749(+) (radA) [Alicycliphilus denitrificans BC]
ATGGCCAAGGACAAAACCCTCTACTCCTGCAGCGAATGCGGCGCGAGCAGCCCGCGCTGGCTCGGCAAATGCCCGGGCTG
CGGGGCCTGGAACACGCTGATCGAGACCGTGCCCGATGCCGGCCCCGGCAAGAACCGTCTGAGCGGCGCGGGCCAGTATG
CGGGCCTGGCGCAGGCGCAGTCGGTGATGCCGCTGGCCGCCATCGAGGCCACCGAGGTGGCACGCACGCCCAGCGGTATC
GAGGAGCTCGACCGCGTGCTCGGCGGCGGCGTGGTCGAGGGCGGCGTGGTGCTCATCGGCGGCGACCCGGGCATCGGCAA
GTCCACGCTGCTGCTGCAGGCCATGGACGCGCTGCAGCGCGTGGGCCTGCCCACGCTCTACGTGACGGGCGAGGAGAGCG
GTGCGCAGGTAGCGCTGCGCTCGCGCCGCCTGGGGCTGGAGGCGAGCCAGGTGAACGTGCTGGCCGAGATCCAGCTGGAG
AAGATCCTCGCCACCATCGAGGCCACGCAGCCCGCCGTGGCGGTGATCGACTCCATACAGACCATCTACTCCGACCAGCT
CACGAGCGCGCCGGGCTCGGTGGCACAGGTGCGCGAATGCGCCGCCCACCTCACGCGGCTGGCCAAGGCCACGGGCATCG
CCGTGGTGCTGGTGGGCCACGTGACCAAGGAGGGCGCGCTGGCCGGCCCGCGCGTGCTGGAGCACATGGTGGACACGGTG
CTGTACTTCGAGGGCGACACGCACAGCAGCTTCCGCCTGGTGCGCGCCATCAAGAACCGCTTCGGCGCGGTGAACGAGAT
CGGCGTGTTCGCCATGACCGAGCGGGGCCTCAAGGGCGTGGCCAACCCCAGCGCCATCTTCCTGTCGCAGCACAGCGAGC
CCGTGCCCGGCAGCTGCGTGCTGGTCACGCTGGAGGGCACGCGCCCGCTGCTGGTGGAGATCCAGGCATTGGTCGATGGC
GGCGGCCCGAGCCCGCGGCGCCTCTCGGTAGGCCTGGAGCGCGACCGCCTGGCCATGCTGCTGGCGGTGCTGCACCGCCA
TGCGGGCGTGGCCTGCGCGGACCAGGACGTGTTCGTCAATGCCGTGGGCGGCGTGCGCATCAGCGAGCCCGCGGCCGATT
TGGCGGTGATGCTGTCCATCACCAGCAGCCTGCGCGGGCGCGCGCTGCCCAAAGGCTTCATCGCCTTCGGCGAGGTAGGC
CTGGCCGGCGAGGTGCGCCCCGCGCCGCGCGGCCAGGAGCGGCTGAAGGAGGCCGCCAAGCTGGGCTTCACCGTGGCCGT
GGTGCCCAAGGCGAACGCGCCCAAAAAGCCCATCCCCGGCCTGGAGATCCACGCCGTGGAGCGCGTGGACGAGGCCATGG
CCGCCGTGCGCGGCCTGGGCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(68-225)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A858ZP71

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.011

98.913

0.485
  radA Streptococcus pneumoniae Rx1

46.638

100

0.467
  radA Streptococcus pneumoniae D39

46.638

100

0.467
  radA Streptococcus pneumoniae R6

46.638

100

0.467
  radA Streptococcus pneumoniae TIGR4

46.638

100

0.467
  radA Streptococcus mitis SK321

47.778

97.826

0.467
  radA Streptococcus mitis NCTC 12261

46.827

99.348

0.465

Multiple sequence alignment