Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | GCB94_RS03005 | Genome accession | NZ_CP045306 |
| Coordinates | 416577..417629 (+) | Length | 350 a.a. |
| NCBI ID | WP_003633239.1 | Uniprot ID | D3HP88 |
| Organism | Legionella longbeachae strain B1445CHC | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 411577..422629
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GCB94_RS02980 (GCB94_02955) | - | 411783..412709 (-) | 927 | WP_003633245.1 | type IV secretion system DotC family protein | - |
| GCB94_RS02985 (GCB94_02960) | dotD | 412690..413181 (-) | 492 | WP_003633244.1 | type IVB secretion system lipoprotein DotD | - |
| GCB94_RS02990 (GCB94_02965) | rsmD | 413350..413895 (-) | 546 | WP_003633243.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| GCB94_RS02995 (GCB94_02970) | - | 413892..415196 (-) | 1305 | WP_003633242.1 | pitrilysin family protein | - |
| GCB94_RS03000 (GCB94_02975) | - | 415193..416515 (-) | 1323 | WP_003633241.1 | pitrilysin family protein | - |
| GCB94_RS03005 (GCB94_02980) | pilA | 416577..417629 (+) | 1053 | WP_003633239.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| GCB94_RS03010 (GCB94_02985) | ftsE | 417616..418266 (+) | 651 | WP_003633237.1 | cell division ATP-binding protein FtsE | - |
| GCB94_RS03015 (GCB94_02990) | ftsX | 418260..419189 (+) | 930 | WP_003633236.1 | permease-like cell division protein FtsX | - |
| GCB94_RS03020 (GCB94_02995) | rpoH | 419236..420090 (+) | 855 | WP_003633234.1 | RNA polymerase sigma factor RpoH | - |
| GCB94_RS03025 (GCB94_03000) | - | 420229..421107 (-) | 879 | WP_003633233.1 | alpha/beta fold hydrolase | - |
| GCB94_RS03030 (GCB94_03005) | - | 421361..422077 (+) | 717 | WP_003633231.1 | dienelactone hydrolase family protein | - |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 38240.87 Da Isoelectric Point: 6.5102
>NTDB_id=393297 GCB94_RS03005 WP_003633239.1 416577..417629(+) (pilA) [Legionella longbeachae strain B1445CHC]
MIKWFKRSHTPTSSEADESQHKEELMPQAPMTKAEQEQEPVKEGFFARFRKSLSKTRHQLGDGIGRLLLGKKEISQELLD
ELETLLISADLGIETTQAVLNQLTEGLARKQLSDGNAVYEALKSYLQGILKQKNQSLTLETADHSPFVILMVGVNGAGKT
TTIGKLAKQFQQQGKKVMLAAGDTFRAAAVEQLLVWGERNDIPVIAQHTGADSASVIFDALQAAKARKMDVLIADTAGRL
HTQSNLMEELKKVKRVLQKLSPDAPHETMLILDASIGQNALVQARQFNEAIGLTGVTMTKLDGTAKGGILFAIANELGIP
FRYIGIGEGIEDLQPFDAAQFVGALFNDHI
MIKWFKRSHTPTSSEADESQHKEELMPQAPMTKAEQEQEPVKEGFFARFRKSLSKTRHQLGDGIGRLLLGKKEISQELLD
ELETLLISADLGIETTQAVLNQLTEGLARKQLSDGNAVYEALKSYLQGILKQKNQSLTLETADHSPFVILMVGVNGAGKT
TTIGKLAKQFQQQGKKVMLAAGDTFRAAAVEQLLVWGERNDIPVIAQHTGADSASVIFDALQAAKARKMDVLIADTAGRL
HTQSNLMEELKKVKRVLQKLSPDAPHETMLILDASIGQNALVQARQFNEAIGLTGVTMTKLDGTAKGGILFAIANELGIP
FRYIGIGEGIEDLQPFDAAQFVGALFNDHI
Nucleotide
Download Length: 1053 bp
>NTDB_id=393297 GCB94_RS03005 WP_003633239.1 416577..417629(+) (pilA) [Legionella longbeachae strain B1445CHC]
ATGATTAAATGGTTCAAACGCAGTCACACGCCAACTTCTTCAGAAGCAGATGAGTCCCAGCATAAAGAAGAGTTAATGCC
GCAAGCTCCTATGACGAAGGCGGAACAAGAGCAAGAGCCTGTAAAAGAAGGATTTTTTGCGCGTTTTAGGAAAAGTTTAA
GTAAAACGCGTCATCAGTTAGGTGATGGTATTGGCCGGTTATTGTTAGGGAAAAAAGAAATCAGTCAAGAGTTGCTGGAT
GAGTTAGAAACTCTTTTAATCAGTGCTGATTTAGGGATAGAAACCACACAAGCGGTATTAAATCAATTGACAGAAGGTTT
AGCACGTAAGCAATTGTCTGACGGTAATGCTGTTTATGAGGCACTTAAATCGTATTTACAAGGGATTTTAAAGCAAAAAA
ATCAATCGTTGACTTTAGAAACCGCAGATCATTCCCCTTTTGTCATTTTAATGGTTGGCGTGAATGGAGCTGGTAAAACA
ACCACTATTGGTAAATTAGCAAAGCAATTTCAACAGCAGGGTAAAAAAGTGATGTTAGCTGCTGGAGATACTTTTAGAGC
TGCAGCGGTAGAACAGTTGCTTGTTTGGGGGGAGCGAAATGATATTCCCGTTATTGCCCAACATACAGGAGCTGATAGTG
CATCCGTTATTTTTGATGCTCTTCAGGCAGCTAAAGCACGAAAAATGGATGTATTAATTGCGGATACGGCGGGACGCTTA
CATACCCAAAGCAATTTAATGGAAGAATTGAAAAAAGTAAAAAGGGTATTACAAAAACTATCTCCTGATGCGCCTCATGA
AACAATGTTGATATTGGATGCATCTATAGGGCAAAATGCATTAGTTCAAGCAAGGCAATTCAATGAAGCGATTGGATTAA
CGGGTGTTACCATGACTAAACTGGATGGGACAGCTAAAGGCGGTATTTTGTTTGCTATTGCTAATGAACTAGGGATACCC
TTTCGTTATATAGGGATTGGTGAGGGAATAGAGGATCTTCAACCCTTTGATGCTGCGCAATTTGTTGGTGCATTATTTAA
TGATCACATTTGA
ATGATTAAATGGTTCAAACGCAGTCACACGCCAACTTCTTCAGAAGCAGATGAGTCCCAGCATAAAGAAGAGTTAATGCC
GCAAGCTCCTATGACGAAGGCGGAACAAGAGCAAGAGCCTGTAAAAGAAGGATTTTTTGCGCGTTTTAGGAAAAGTTTAA
GTAAAACGCGTCATCAGTTAGGTGATGGTATTGGCCGGTTATTGTTAGGGAAAAAAGAAATCAGTCAAGAGTTGCTGGAT
GAGTTAGAAACTCTTTTAATCAGTGCTGATTTAGGGATAGAAACCACACAAGCGGTATTAAATCAATTGACAGAAGGTTT
AGCACGTAAGCAATTGTCTGACGGTAATGCTGTTTATGAGGCACTTAAATCGTATTTACAAGGGATTTTAAAGCAAAAAA
ATCAATCGTTGACTTTAGAAACCGCAGATCATTCCCCTTTTGTCATTTTAATGGTTGGCGTGAATGGAGCTGGTAAAACA
ACCACTATTGGTAAATTAGCAAAGCAATTTCAACAGCAGGGTAAAAAAGTGATGTTAGCTGCTGGAGATACTTTTAGAGC
TGCAGCGGTAGAACAGTTGCTTGTTTGGGGGGAGCGAAATGATATTCCCGTTATTGCCCAACATACAGGAGCTGATAGTG
CATCCGTTATTTTTGATGCTCTTCAGGCAGCTAAAGCACGAAAAATGGATGTATTAATTGCGGATACGGCGGGACGCTTA
CATACCCAAAGCAATTTAATGGAAGAATTGAAAAAAGTAAAAAGGGTATTACAAAAACTATCTCCTGATGCGCCTCATGA
AACAATGTTGATATTGGATGCATCTATAGGGCAAAATGCATTAGTTCAAGCAAGGCAATTCAATGAAGCGATTGGATTAA
CGGGTGTTACCATGACTAAACTGGATGGGACAGCTAAAGGCGGTATTTTGTTTGCTATTGCTAATGAACTAGGGATACCC
TTTCGTTATATAGGGATTGGTGAGGGAATAGAGGATCTTCAACCCTTTGATGCTGCGCAATTTGTTGGTGCATTATTTAA
TGATCACATTTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
55.375 |
87.714 |
0.486 |