Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GCU50_RS06415 Genome accession   NZ_CP045300
Coordinates   1252925..1253545 (-) Length   206 a.a.
NCBI ID   WP_090119416.1    Uniprot ID   A0A1I6YXE5
Organism   Kosakonia arachidis strain KACC 18508     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1247925..1258545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GCU50_RS06400 helD 1248163..1250217 (-) 2055 WP_090119423.1 DNA helicase IV -
  GCU50_RS06405 - 1250340..1250786 (+) 447 WP_090119420.1 YccF domain-containing protein -
  GCU50_RS06410 yccS 1250802..1252931 (+) 2130 WP_090119418.1 YccS family putative transporter -
  GCU50_RS06415 sxy/tfoX 1252925..1253545 (-) 621 WP_090119416.1 TfoX/Sxy family DNA transformation protein Regulator
  GCU50_RS06420 sulA 1253763..1254272 (+) 510 WP_090119414.1 SOS-induced cell division inhibitor SulA -
  GCU50_RS06425 ompA 1254651..1255700 (+) 1050 WP_090119412.1 porin OmpA -
  GCU50_RS06430 matP 1255779..1256231 (-) 453 WP_090119410.1 macrodomain Ter protein MatP -
  GCU50_RS06435 - 1256414..1258174 (+) 1761 WP_090119408.1 Lon protease family protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23567.23 Da        Isoelectric Point: 9.0456

>NTDB_id=393242 GCU50_RS06415 WP_090119416.1 1252925..1253545(-) (sxy/tfoX) [Kosakonia arachidis strain KACC 18508]
MEDLSYQRIHQSCECLTSLGEIRHRAHFGGYSLSVDDTVFAMVAEGELYLRACEQSAQYAITHHAPLLVFNKRGREVSLN
YYFVDQALWNDRPMLLELSAYSLDAARREKAQRSARKRLRDLPNLTFQLEMQLRDAGIMDVQTLRLLGAKASWLRLRKVN
RHLGVKILLALEGAIAGLHEAALPAQTRQELMEWFAIVMKKTANPQ

Nucleotide


Download         Length: 621 bp        

>NTDB_id=393242 GCU50_RS06415 WP_090119416.1 1252925..1253545(-) (sxy/tfoX) [Kosakonia arachidis strain KACC 18508]
ATGGAAGACCTTTCTTATCAGCGTATACATCAATCATGTGAATGCCTCACATCGCTTGGCGAAATTCGTCACCGCGCCCA
TTTTGGCGGTTATAGCTTGTCGGTGGATGATACGGTTTTTGCGATGGTGGCCGAAGGAGAGCTTTACCTGCGAGCCTGTG
AACAAAGTGCTCAGTATGCAATAACGCACCATGCACCACTTTTAGTATTCAACAAACGCGGACGGGAGGTTTCGTTAAAT
TACTACTTTGTGGATCAGGCGTTATGGAACGATCGCCCTATGCTGCTGGAACTTTCGGCATACTCTCTCGATGCTGCCCG
GCGTGAAAAAGCGCAACGCAGCGCCCGGAAACGTCTGCGCGATCTACCCAATCTGACGTTTCAGCTAGAAATGCAGCTTC
GTGATGCAGGGATTATGGATGTGCAGACATTGCGTCTTCTTGGCGCCAAGGCCAGCTGGCTTAGGTTGCGGAAGGTGAAC
CGCCATCTGGGTGTGAAAATTCTTCTGGCGCTGGAAGGCGCTATCGCTGGGCTGCACGAAGCGGCGCTCCCGGCGCAGAC
ACGCCAGGAACTGATGGAATGGTTCGCTATTGTGATGAAGAAAACGGCTAATCCTCAATGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1I6YXE5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

57.073

99.515

0.568

Multiple sequence alignment