Detailed information NTG0393220

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: GCU48_RS07520
• Genome accession: NZ_CP045298
• Coordinates: 1565928..1567301 (-)
• Length: 457 a.a.
• NCBI ID: WP_152379554.1
• Uniprot ID: -
• Organism: Paenibacillus brasilensis strain KACC 13842
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1560928..1572301

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GCU48_RS07495	ispF	1561521..1561997 (-)	477	WP_025715695.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GCU48_RS07500	ispD	1561994..1562692 (-)	699	WP_152379553.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GCU48_RS07505	-	1562763..1563848 (-)	1086	WP_025715697.1	PIN/TRAM domain-containing protein	-
GCU48_RS07510	pssA	1564038..1564784 (-)	747	WP_025715699.1	CDP-diacylglycerol--serine O-phosphatidyltransferase	-
GCU48_RS07515	disA	1564839..1565915 (-)	1077	WP_013312183.1	DNA integrity scanning diadenylate cyclase DisA	-
GCU48_RS07520	radA	1565928..1567301 (-)	1374	WP_152379554.1	DNA repair protein RadA	Machinery gene
GCU48_RS07525	clpC	1567544..1569988 (-)	2445	WP_152379555.1	ATP-dependent protease ATP-binding subunit ClpC	-
GCU48_RS07530	-	1570033..1571097 (-)	1065	WP_025715704.1	protein arginine kinase	-
GCU48_RS07535	-	1571127..1571651 (-)	525	WP_152379556.1	UvrB/UvrC motif-containing protein	-
GCU48_RS07540	-	1571735..1572199 (-)	465	WP_025715706.1	CtsR family transcriptional regulator	-

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 49221.91 Da
• Isoelectric Point: 6.7620

>NTDB_id=393220 GCU48_RS07520 WP_152379554.1 1565928..1567301(-) (radA) [Paenibacillus brasilensis strain KACC 13842]
MAKVKTKFSCTECGYESPKWYGKCPGCQAWNSMVEETESVVKTQGMGSSLLTHSTKDKPLPIIEVESGKEARILTGIGEL
NRVLGGGVVPGSLVLVGGDPGIGKSTLMLQTSNELALTGLKVLYVSGEESVRQTKLRADRLGALSPNLYVLCETNLETIE
EAVDSLKPEFLVIDSIQTVYLPEVTSAPGSVAQVRECTSRFMRIAKGLGIATVLVGHVTKEGAIAGPRLLEHMVDCVLYF
EGERHHTYRLLRAVKNRFGSTNEIGIFEMAESGLREVANPSELFLSERPLGVAGSTVVASVEGTRPVLVELQALIAATHF
PSPRRMGTGIDHHRMGLIIAVLEKRMGMFLQNQDAYLNVAGGVKLDEPAVDLAIAVSIASSFRDAPTKPYDVIFGEVGLT
GEVRAVSRAEQRVREAEKLGFKRVIMPEKSLKGWTHPKGIQIIGVATVADALAAALD

Nucleotide

• Length: 1374 bp

>NTDB_id=393220 GCU48_RS07520 WP_152379554.1 1565928..1567301(-) (radA) [Paenibacillus brasilensis strain KACC 13842]
ATGGCTAAAGTGAAAACTAAATTTTCCTGTACGGAATGCGGTTATGAATCGCCCAAATGGTACGGAAAATGTCCTGGATG
CCAGGCATGGAATTCCATGGTGGAAGAAACGGAAAGCGTTGTAAAAACTCAAGGAATGGGTTCTTCCCTTCTTACTCATA
GCACAAAAGATAAGCCGCTCCCCATTATTGAGGTAGAGAGTGGCAAAGAAGCGCGAATTTTGACGGGAATTGGCGAATTG
AATCGTGTGCTTGGCGGAGGCGTAGTGCCGGGGTCCCTCGTTCTGGTGGGCGGTGATCCGGGGATTGGTAAATCTACGCT
GATGCTACAAACCTCTAATGAGCTCGCTTTAACCGGTTTGAAGGTGCTGTACGTGTCTGGTGAGGAGTCGGTTCGTCAAA
CGAAGCTGCGCGCAGACCGACTGGGTGCCTTGTCTCCCAATTTGTACGTATTATGTGAGACGAATTTGGAGACGATTGAA
GAAGCAGTGGACAGCTTGAAGCCCGAATTTTTGGTGATCGACTCTATTCAGACCGTATATTTGCCGGAGGTGACAAGTGC
GCCAGGAAGTGTGGCTCAGGTCCGAGAGTGTACCTCACGCTTTATGCGAATTGCCAAGGGACTAGGGATTGCTACGGTGC
TGGTAGGACATGTGACCAAGGAAGGGGCAATTGCAGGCCCACGTCTGTTGGAGCATATGGTCGATTGCGTGCTTTATTTT
GAAGGAGAGCGTCATCATACGTATCGGCTGCTGCGTGCAGTTAAGAACCGTTTCGGTTCTACGAATGAAATCGGCATTTT
TGAAATGGCTGAAAGTGGCTTGCGTGAGGTAGCGAATCCTTCTGAGCTTTTCCTGTCTGAACGACCACTAGGGGTGGCTG
GTTCCACTGTTGTAGCCAGTGTGGAAGGAACCCGACCTGTGCTGGTCGAACTGCAAGCGCTGATTGCGGCCACGCATTTT
CCTTCTCCACGCCGAATGGGTACAGGAATCGACCATCATCGGATGGGATTAATTATCGCCGTGCTGGAAAAACGGATGGG
CATGTTTTTGCAAAACCAGGATGCTTATCTCAACGTAGCCGGCGGCGTGAAGCTGGATGAGCCCGCGGTGGATTTGGCTA
TAGCGGTGAGCATTGCTTCCAGTTTCCGGGACGCTCCTACCAAGCCGTACGATGTAATTTTTGGTGAAGTAGGGTTGACA
GGCGAGGTGCGGGCTGTATCCCGAGCAGAGCAGCGAGTGCGGGAAGCGGAAAAACTGGGTTTCAAACGGGTGATCATGCC
AGAGAAAAGCCTGAAGGGCTGGACACATCCGAAAGGGATACAAATTATAGGAGTAGCAACGGTGGCAGATGCACTGGCAG
CCGCATTAGATTAG

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (72-222)

• Subunit ChlI of Mg-chelatase (ChlI) (350-429)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	67.031	100	0.672
radA	Streptococcus mitis NCTC 12261	58.628	98.906	0.58
radA	Streptococcus pneumoniae Rx1	58.628	98.906	0.58
radA	Streptococcus pneumoniae D39	58.628	98.906	0.58
radA	Streptococcus pneumoniae R6	58.628	98.906	0.58
radA	Streptococcus pneumoniae TIGR4	58.628	98.906	0.58
radA	Streptococcus mitis SK321	58.407	98.906	0.578