Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   GCU48_RS06575 Genome accession   NZ_CP045298
Coordinates   1395670..1396626 (-) Length   318 a.a.
NCBI ID   WP_152379473.1    Uniprot ID   -
Organism   Paenibacillus brasilensis strain KACC 13842     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1390670..1401626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GCU48_RS06550 - 1390794..1392164 (+) 1371 WP_152379470.1 hemolysin family protein -
  GCU48_RS06555 bacA 1392317..1393090 (+) 774 WP_049825175.1 undecaprenyl-diphosphate phosphatase -
  GCU48_RS06560 - 1393236..1393562 (-) 327 WP_025717978.1 thioredoxin family protein -
  GCU48_RS06565 - 1393692..1394603 (-) 912 WP_152379471.1 aldo/keto reductase -
  GCU48_RS06570 - 1394776..1395519 (-) 744 WP_152379472.1 alpha/beta hydrolase-fold protein -
  GCU48_RS26795 - 1395516..1395680 (-) 165 WP_167518656.1 hypothetical protein -
  GCU48_RS06575 ceuB 1395670..1396626 (-) 957 WP_152379473.1 ABC transporter permease Machinery gene
  GCU48_RS06580 - 1396775..1397731 (-) 957 WP_152379474.1 IS30 family transposase -
  GCU48_RS06585 - 1398038..1398715 (+) 678 WP_152382119.1 response regulator transcription factor -
  GCU48_RS06590 - 1398717..1399634 (+) 918 WP_152379475.1 HAMP domain-containing sensor histidine kinase -
  GCU48_RS06595 - 1399743..1400420 (+) 678 WP_152379476.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 34818.84 Da        Isoelectric Point: 9.7803

>NTDB_id=393218 GCU48_RS06575 WP_152379473.1 1395670..1396626(-) (ceuB) [Paenibacillus brasilensis strain KACC 13842]
MKKLRYLILAFLLLGFASVFIGVHDVTPLDLFHLTDDQAQVLLISRLPRLVSIIIAGASMSICGLIMQHLTQNRFVSPTT
AGTMDAARLGVLTAIMVFGAAGFWTKMLAAFGFALAGTLIFMKILDKIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNL
IQSISSWMQGDFSLIMSGRYEMLYLSVPLVALAYIYANRFTIAGMGEDFAANLGVHYKRTVNVGLVIVALVSSVVILTVG
TIPFLGLVVPNLVSMYMGDNLKKILAHTAILGAVFVLFCDILGRVIIYPYEISVGLTVGVIGSALFLYLLLRRRAYES

Nucleotide


Download         Length: 957 bp        

>NTDB_id=393218 GCU48_RS06575 WP_152379473.1 1395670..1396626(-) (ceuB) [Paenibacillus brasilensis strain KACC 13842]
ATGAAGAAATTGCGTTATTTAATACTGGCTTTTCTGCTACTGGGCTTTGCCTCGGTTTTTATCGGTGTTCATGATGTCAC
TCCACTTGATTTGTTCCACCTTACCGATGATCAGGCGCAGGTGCTCCTAATTAGCAGGCTTCCACGTTTGGTTAGCATTA
TTATCGCTGGAGCGAGTATGAGTATCTGTGGACTTATCATGCAGCACCTTACCCAGAACCGATTTGTATCGCCTACTACC
GCAGGAACGATGGATGCTGCACGCTTGGGTGTCTTGACTGCAATTATGGTATTTGGAGCGGCTGGATTTTGGACGAAGAT
GCTGGCGGCTTTCGGATTTGCCCTGGCGGGGACACTGATTTTCATGAAGATACTGGATAAAATCCGTTTCAAGGACCCGG
TATTTATCCCGTTGGTTGGTTTGATGTTCGGAGGCATTTTGAATTCAGTGACGACCTTCTTTGCTTATAAATACAATCTG
ATCCAGAGCATTTCTTCGTGGATGCAGGGTGATTTTTCACTGATCATGAGCGGACGCTACGAGATGCTGTATCTTAGTGT
TCCTTTGGTTGCGTTGGCGTACATATATGCGAATCGTTTTACAATTGCAGGCATGGGTGAGGATTTTGCGGCCAATTTGG
GCGTACATTACAAGCGCACCGTCAATGTCGGTTTGGTGATCGTGGCTTTGGTTTCCTCTGTTGTCATCTTAACGGTCGGG
ACGATTCCCTTTTTGGGACTGGTTGTACCTAATCTCGTCAGTATGTATATGGGGGATAATCTAAAAAAAATCCTGGCTCA
TACAGCGATCCTGGGCGCCGTCTTTGTGCTGTTTTGCGATATTTTGGGACGGGTGATTATTTATCCGTATGAAATTTCTG
TAGGGCTTACGGTTGGTGTGATCGGGAGCGCGTTGTTCTTGTATTTGCTGCTGAGGAGAAGGGCTTATGAATCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(11-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.274

98.742

0.506

Multiple sequence alignment