Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   GCU48_RS01740 Genome accession   NZ_CP045298
Coordinates   395763..397526 (-) Length   587 a.a.
NCBI ID   WP_152378837.1    Uniprot ID   -
Organism   Paenibacillus brasilensis strain KACC 13842     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 390763..402526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GCU48_RS01720 - 390805..391311 (-) 507 WP_152378833.1 YpuI family protein -
  GCU48_RS01725 - 391498..393378 (+) 1881 WP_152378834.1 S8 family peptidase -
  GCU48_RS01730 - 393437..393667 (-) 231 WP_152378835.1 hypothetical protein -
  GCU48_RS01735 rcrQ 393920..395770 (-) 1851 WP_152378836.1 ABC transporter ATP-binding protein Regulator
  GCU48_RS01740 rcrP 395763..397526 (-) 1764 WP_152378837.1 ABC transporter ATP-binding protein Regulator
  GCU48_RS01745 - 397595..398005 (-) 411 WP_025717763.1 MarR family transcriptional regulator -
  GCU48_RS01750 - 398342..399562 (+) 1221 WP_152378838.1 PLP-dependent aminotransferase family protein -
  GCU48_RS01760 - 400521..401086 (-) 566 Protein_309 flavin reductase family protein -
  GCU48_RS01765 - 401151..402266 (-) 1116 WP_152378839.1 Nif3-like dinuclear metal center hexameric protein -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64683.99 Da        Isoelectric Point: 7.8976

>NTDB_id=393211 GCU48_RS01740 WP_152378837.1 395763..397526(-) (rcrP) [Paenibacillus brasilensis strain KACC 13842]
MLKIFKYLKKNEWKLVLFSLAFIVVQVWLDLKLPDYMAEITTKLQTAGTPISELLVPGSYMLLCAVGSMIASIIVGYFAA
KVAAGLAMRLRAMVFDKTLSFSMEEMNSFSTASLITRSTNDVTQIQTVVALGLQVIIKAPILAVWAIVKIADKNWQWTAS
TGGAVAVLTLMLSVIVIFALPSFKKIQRLTDNLNKVTREHLTGLRVVRAYNADQYQEEKFGQANVELMNTNLFANRLMAM
VGPGMTFIMSGLSVSIYWIGAYLINGAAVSDRITLFSNMVVFSSYAMQVVMAFMMVSMIFFLMPRASISAKRIMEVLNTE
SSIVDGHETAGEEDVMGQVEFRNVSFKYPDAEEPVLHNISFTAKRGETVAFIGATGSGKTSVVNLISRFYDVTEGEVLVD
GVNVRNYKQQALHNKIGYVPQRAVLFSGTVASNVSYGDDGRAGASEKLVKAAVEIAQGTEFVEKMDGQYQGRISQGGANV
SGGQKQRLSIARAIYRQPEIYIFDDSFSALDYRTDRILRSALKKETGHATTLIVAQRIGTIKDADRIIVLEQGEIVGNGT
HEELMVNCSTYQEIAYSQLSKEELVHG

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=393211 GCU48_RS01740 WP_152378837.1 395763..397526(-) (rcrP) [Paenibacillus brasilensis strain KACC 13842]
ATGCTGAAGATATTCAAATATCTCAAGAAAAATGAATGGAAGCTCGTGCTTTTCAGCCTTGCTTTCATCGTTGTGCAGGT
ATGGCTTGATCTGAAGCTGCCTGATTATATGGCAGAAATTACAACCAAGCTGCAAACAGCAGGAACACCTATATCAGAAC
TGCTGGTCCCCGGTAGTTACATGCTGTTGTGTGCCGTCGGCAGTATGATTGCATCTATTATTGTCGGCTATTTTGCGGCG
AAGGTGGCGGCAGGACTGGCCATGCGTCTGCGTGCGATGGTCTTTGATAAGACCTTATCCTTCTCGATGGAAGAGATGAA
CAGCTTTTCGACGGCAAGCCTCATCACACGCTCCACGAACGATGTTACCCAGATTCAAACAGTGGTTGCGCTAGGACTGC
AGGTGATCATCAAGGCACCGATTCTGGCTGTGTGGGCCATTGTGAAAATCGCGGATAAAAACTGGCAGTGGACCGCCTCT
ACAGGAGGGGCCGTGGCTGTCCTGACCCTGATGCTGAGTGTCATTGTTATTTTCGCTCTGCCAAGTTTCAAGAAAATCCA
GCGTCTCACCGATAATCTGAACAAGGTAACACGTGAGCATCTGACCGGGCTTCGGGTGGTGCGCGCTTACAATGCCGATC
AGTACCAGGAGGAGAAGTTCGGGCAGGCCAATGTCGAATTGATGAATACAAACCTGTTTGCGAACCGGTTAATGGCAATG
GTTGGCCCGGGCATGACCTTTATTATGTCGGGTCTGAGTGTCTCTATCTATTGGATTGGCGCTTACCTGATTAACGGAGC
GGCCGTGTCGGACCGCATTACGTTGTTCTCTAATATGGTCGTATTTTCCTCTTATGCGATGCAGGTGGTTATGGCCTTTA
TGATGGTAAGTATGATCTTCTTCCTGATGCCTCGAGCTTCGATTTCTGCGAAACGGATCATGGAGGTATTGAATACCGAA
TCCAGCATCGTTGACGGACATGAGACGGCTGGAGAAGAGGACGTTATGGGTCAGGTGGAATTCCGTAATGTCAGCTTCAA
ATATCCGGACGCGGAGGAGCCCGTGCTTCACAACATTAGCTTTACGGCAAAAAGGGGCGAGACGGTTGCCTTTATTGGCG
CAACAGGCAGCGGCAAAACCAGCGTAGTCAATCTGATTTCCCGTTTCTACGATGTGACCGAGGGAGAGGTGCTCGTGGAT
GGTGTGAATGTCAGAAACTATAAGCAGCAGGCACTCCATAACAAAATCGGGTACGTCCCTCAGAGAGCCGTGCTTTTCAG
CGGTACAGTGGCATCCAACGTTTCGTATGGCGATGACGGAAGAGCAGGAGCTTCGGAGAAACTCGTCAAAGCAGCCGTAG
AGATTGCCCAAGGCACGGAATTTGTTGAAAAAATGGATGGTCAGTATCAGGGACGGATTTCACAAGGTGGAGCGAACGTG
TCCGGTGGTCAAAAGCAGCGTCTGTCCATTGCGCGTGCCATTTACCGCCAGCCGGAGATTTATATCTTCGATGATTCCTT
CTCGGCACTGGACTACAGAACAGACCGGATTCTGCGCTCCGCTCTTAAAAAAGAAACCGGCCATGCGACGACACTCATTG
TTGCTCAGCGCATAGGCACCATTAAGGACGCTGACCGGATTATCGTACTGGAACAGGGGGAGATTGTAGGGAACGGCACA
CATGAAGAGCTGATGGTGAACTGCAGCACCTATCAGGAGATCGCTTATTCGCAGCTTTCGAAGGAGGAACTCGTACATGG
ATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-292)

ABC transporter (ABC_tran)

(356-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.421

100

0.535

Multiple sequence alignment