Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   GCU48_RS01735 Genome accession   NZ_CP045298
Coordinates   393920..395770 (-) Length   616 a.a.
NCBI ID   WP_152378836.1    Uniprot ID   -
Organism   Paenibacillus brasilensis strain KACC 13842     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 388920..400770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GCU48_RS01705 - 389087..389785 (-) 699 WP_025719226.1 lytic transglycosylase domain-containing protein -
  GCU48_RS01710 - 389953..390348 (-) 396 WP_152378832.1 hypothetical protein -
  GCU48_RS01715 - 390393..390620 (-) 228 WP_025719229.1 DUF1540 domain-containing protein -
  GCU48_RS01720 - 390805..391311 (-) 507 WP_152378833.1 YpuI family protein -
  GCU48_RS01725 - 391498..393378 (+) 1881 WP_152378834.1 S8 family peptidase -
  GCU48_RS01730 - 393437..393667 (-) 231 WP_152378835.1 hypothetical protein -
  GCU48_RS01735 rcrQ 393920..395770 (-) 1851 WP_152378836.1 ABC transporter ATP-binding protein Regulator
  GCU48_RS01740 rcrP 395763..397526 (-) 1764 WP_152378837.1 ABC transporter ATP-binding protein Regulator
  GCU48_RS01745 - 397595..398005 (-) 411 WP_025717763.1 MarR family transcriptional regulator -
  GCU48_RS01750 - 398342..399562 (+) 1221 WP_152378838.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 67887.61 Da        Isoelectric Point: 6.5614

>NTDB_id=393210 GCU48_RS01735 WP_152378836.1 393920..395770(-) (rcrQ) [Paenibacillus brasilensis strain KACC 13842]
MDKNEHTVGSQDMKMKQRGPMGGGPARGMAPGEKANDFKKTIVQLLSYSKAYVPVIILAMVLALVGSAFNVIGPDKLSDI
ANLIQEGIVTGVDVSAVQKIVFVLVLLYGLGLIFNYFQGFITATVSQRLTKKMRTELSRKINHMPLKYFDATSYGNVLSR
VTNDVDTIGQTLNNSLGTLVSALATFVGALIMMLYTNWIMTVTGILATLIGFSLMTVIMKHSQKYFVAQQAELGQINGHI
EETYAGHNVVKVYNGEKAAKEVFHGINGRLYTNAWKSQFMSGLMMPVMMFIGNFGYVAVCVVGALLVNQHTITIGTIVAF
MVYIRLFTQPLSQLAQAATNLQSAAAASERVFEFLGEEELADESDKTEKLNNAKGNIEFKHVRFGYHEDRMIIKDFSMKA
EAGQKIAIVGPTGAGKTTLVNLLMRFYELNGGEIYIDGTPISQLTRENIHELFCMVLQDTWLFEGTIRENIVFSKQHVTD
EQVEAACRAVGLHSFLKTLPQGYDTMLDDKANLSAGQKQLITIARAMIEDAPMLILDEATSSVDTRTELLIQQAMDQLTV
GKTSFVIAHRLSTIKNADLILVMKDGNIIETGNHEELLAKGGFYADLYNSQFEHAS

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=393210 GCU48_RS01735 WP_152378836.1 393920..395770(-) (rcrQ) [Paenibacillus brasilensis strain KACC 13842]
ATGGATAAGAATGAACACACCGTCGGTAGTCAGGATATGAAAATGAAACAGCGAGGTCCCATGGGTGGAGGTCCTGCGAG
GGGGATGGCTCCTGGTGAAAAAGCGAATGATTTTAAAAAGACCATCGTCCAGCTCTTATCCTACAGCAAGGCCTATGTGC
CCGTAATTATACTCGCAATGGTGCTGGCCCTGGTCGGTTCCGCCTTCAATGTAATTGGTCCGGATAAGCTCAGCGATATT
GCCAACCTGATCCAGGAAGGAATCGTAACAGGGGTTGATGTGAGTGCTGTCCAGAAGATTGTTTTTGTATTGGTGCTTTT
GTATGGTCTGGGTCTTATCTTTAACTATTTCCAAGGCTTCATTACGGCAACCGTGTCACAGCGTCTTACAAAGAAGATGC
GGACAGAGCTGTCCCGAAAAATCAATCATATGCCTTTGAAGTATTTTGATGCTACAAGCTACGGTAATGTGCTTAGTCGT
GTGACCAACGATGTCGATACCATCGGTCAAACGTTAAACAACAGTCTCGGCACGCTTGTCAGCGCGCTGGCAACCTTCGT
GGGTGCCCTGATTATGATGCTGTATACGAACTGGATCATGACCGTTACCGGGATTCTGGCTACGTTGATCGGTTTTTCCT
TGATGACCGTGATTATGAAGCATTCACAGAAATATTTTGTAGCACAGCAAGCGGAGCTTGGCCAGATCAACGGTCATATC
GAAGAAACCTATGCCGGTCATAACGTAGTCAAGGTATATAATGGAGAAAAAGCAGCCAAGGAAGTGTTCCATGGCATTAA
CGGCCGCTTATATACAAATGCATGGAAGTCCCAGTTCATGTCAGGCCTGATGATGCCGGTCATGATGTTCATCGGGAATT
TCGGTTATGTCGCGGTCTGTGTCGTGGGCGCTTTGCTGGTGAATCAACATACTATAACGATCGGAACTATTGTAGCCTTC
ATGGTATATATTCGTCTGTTTACACAGCCTTTGTCACAGCTGGCACAGGCCGCAACCAATCTGCAATCTGCAGCTGCCGC
CAGTGAACGTGTATTCGAATTTCTGGGTGAGGAAGAATTGGCGGATGAGAGCGACAAGACCGAGAAGCTGAACAACGCCA
AAGGGAATATCGAATTTAAACATGTCCGTTTCGGTTATCACGAAGACCGTATGATTATCAAGGATTTCTCTATGAAAGCT
GAAGCTGGTCAGAAAATTGCCATTGTTGGTCCGACAGGCGCCGGTAAGACAACGCTCGTGAATTTGCTTATGCGGTTCTA
TGAGCTGAACGGCGGGGAAATCTATATTGACGGAACCCCGATCAGCCAATTAACACGTGAGAATATTCATGAATTATTCT
GTATGGTGTTGCAGGATACCTGGTTGTTTGAAGGAACGATCCGTGAGAATATCGTCTTTTCCAAACAGCATGTTACCGAT
GAACAGGTGGAAGCTGCGTGTAGAGCGGTAGGGCTGCACAGCTTCCTTAAAACACTGCCGCAAGGCTATGATACGATGCT
GGACGATAAAGCCAATCTCTCTGCCGGTCAAAAGCAATTGATTACCATTGCAAGAGCCATGATTGAAGATGCACCCATGC
TCATTCTGGATGAGGCCACAAGTTCGGTCGATACGCGTACGGAATTGCTGATTCAACAAGCGATGGACCAGCTGACTGTA
GGTAAAACCTCCTTTGTGATTGCCCACCGGCTCTCAACGATCAAGAACGCCGATCTGATTCTGGTCATGAAGGATGGTAA
CATTATCGAAACGGGCAACCATGAGGAGTTGCTGGCTAAAGGCGGCTTCTATGCCGATCTATACAATAGCCAGTTTGAAC
ATGCATCTTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(56-331)

ABC transporter (ABC_tran)

(394-541)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

55.806

93.669

0.523

Multiple sequence alignment