Detailed information NTG0393197

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: GCU45_RS19380
• Genome accession: NZ_CP045295
• Coordinates: 4355760..4357127 (+)
• Length: 455 a.a.
• NCBI ID: WP_089549786.1
• Uniprot ID: -
• Organism: Paenibacillus cellulositrophicus strain KACC 16577
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 4350760..4362127

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GCU45_RS19360	-	4350903..4351364 (+)	462	WP_076176703.1	CtsR family transcriptional regulator	-
GCU45_RS19365	-	4351394..4351918 (+)	525	WP_152400021.1	UvrB/UvrC motif-containing protein	-
GCU45_RS19370	-	4351947..4353005 (+)	1059	WP_145165258.1	protein arginine kinase	-
GCU45_RS19375	clpC	4353083..4355533 (+)	2451	WP_152400022.1	ATP-dependent protease ATP-binding subunit ClpC	-
GCU45_RS19380	radA	4355760..4357127 (+)	1368	WP_089549786.1	DNA repair protein RadA	Machinery gene
GCU45_RS19385	disA	4357141..4358217 (+)	1077	WP_076176708.1	DNA integrity scanning diadenylate cyclase DisA	-
GCU45_RS19390	pssA	4358272..4359003 (+)	732	WP_076176709.1	CDP-diacylglycerol--serine O-phosphatidyltransferase	-
GCU45_RS19395	-	4359109..4359504 (-)	396	WP_076176710.1	DUF1573 domain-containing protein	-
GCU45_RS19400	-	4359732..4360808 (+)	1077	WP_076176711.1	PIN/TRAM domain-containing protein	-
GCU45_RS19405	ispD	4360869..4361573 (+)	705	WP_280117408.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GCU45_RS19410	ispF	4361570..4362058 (+)	489	WP_105441910.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-

Sequence

Protein

• Length: 455 a.a.
• Molecular weight: 49502.32 Da
• Isoelectric Point: 6.8171

>NTDB_id=393197 GCU45_RS19380 WP_089549786.1 4355760..4357127(+) (radA) [Paenibacillus cellulositrophicus strain KACC 16577]
MAKSKTKFYCTECGYEAAKWYGKCPGCQAWNSMVEETESIIKTQGMNSPLFHSKEKPLSIINIESSQEARVLTGIGELNR
VLGGGIVPGSLILVGGDPGIGKSTLLLQTSHALTQSGLRVLYVSGEESVRQTKLRADRLGALSPELYVLCETNMDLIEEA
IESVKPQFLVIDSIQTVYIPEVTSAPGSVAQVRECTARFMRVAKGLGIATVLVGHVTKEGAIAGPRLLEHMVDCVLYFEG
ERHHTYRLLRAVKNRFGSTNEIGIFEMNEVGLVEVGNPSELFLSERPLGVAGSTVVASMEGTRPVLVELQALISSTHFPS
PRRMCTGIDHHRMGLIIAVLEKRMGMFLQNQDAYLNVAGGVKLDEPAVDLAIAVSIASSFRDIPTKPYDVMFGEVGLTGE
VRGVSRVEQRVREAEKLGFKRIILPEKSLKGWRHPKGIEIIGVSTVADALAVALD

Nucleotide

• Length: 1368 bp

>NTDB_id=393197 GCU45_RS19380 WP_089549786.1 4355760..4357127(+) (radA) [Paenibacillus cellulositrophicus strain KACC 16577]
ATGGCCAAATCGAAAACGAAATTTTACTGTACCGAGTGCGGCTATGAAGCTGCCAAGTGGTACGGAAAGTGTCCGGGCTG
CCAAGCCTGGAACTCGATGGTAGAAGAAACGGAAAGCATCATCAAGACGCAGGGGATGAATTCCCCGCTTTTTCATAGTA
AAGAAAAGCCGCTTTCGATCATAAATATAGAGAGCAGCCAGGAAGCTAGGGTGCTGACCGGGATCGGCGAGCTCAACCGC
GTTCTGGGCGGCGGGATCGTTCCCGGATCGCTCATTCTCGTCGGGGGCGACCCCGGCATCGGCAAGTCGACCCTGCTCCT
GCAAACGTCGCACGCTCTGACGCAGTCCGGCCTGCGCGTGCTGTACGTGTCCGGTGAGGAATCGGTCCGTCAGACCAAGC
TCCGGGCGGACCGCCTCGGCGCCCTGTCGCCGGAACTGTACGTTCTGTGCGAGACCAATATGGATCTGATCGAAGAGGCG
ATCGAGAGTGTAAAGCCTCAGTTTTTGGTGATCGACTCCATCCAGACGGTCTACATTCCCGAGGTGACCAGCGCGCCGGG
AAGCGTGGCGCAGGTCCGGGAATGTACGGCCCGGTTTATGCGGGTAGCCAAGGGGCTCGGCATCGCCACCGTCCTTGTGG
GGCATGTTACAAAGGAAGGGGCCATCGCCGGACCGAGGCTGCTGGAGCATATGGTGGACTGTGTGCTTTATTTTGAAGGT
GAGCGTCATCATACCTACCGGCTGTTAAGAGCCGTTAAGAACCGCTTTGGATCGACTAATGAGATCGGCATTTTCGAGAT
GAACGAGGTCGGGCTGGTCGAAGTGGGAAACCCGTCGGAGCTGTTTCTGTCCGAGCGCCCGCTCGGCGTGGCGGGATCCA
CGGTCGTGGCCAGCATGGAGGGCACCAGACCCGTCCTGGTCGAGCTTCAGGCCTTGATCTCTTCCACGCATTTTCCGTCA
CCCCGGCGCATGTGCACCGGGATCGACCATCACCGGATGGGACTGATCATTGCGGTGCTGGAGAAGCGGATGGGCATGTT
CCTGCAGAATCAGGATGCGTACCTGAACGTGGCGGGGGGCGTCAAGCTGGACGAACCGGCGGTCGATCTCGCCATCGCCG
TCAGCATCGCCTCCAGCTTTCGGGATATTCCGACAAAGCCGTATGACGTCATGTTCGGCGAAGTCGGGCTGACCGGCGAA
GTCCGGGGCGTCTCCCGTGTGGAACAGCGCGTCCGGGAAGCGGAGAAGCTGGGGTTCAAGCGGATTATTTTACCGGAGAA
AAGTTTGAAAGGATGGAGGCACCCCAAAGGTATTGAAATCATCGGAGTGAGTACCGTTGCAGATGCACTAGCGGTCGCGT
TAGATTAG

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (348-427)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• AAA domain (AAA_25) (64-220)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	67.32	100	0.679
radA	Streptococcus pneumoniae Rx1	58.667	98.901	0.58
radA	Streptococcus pneumoniae D39	58.667	98.901	0.58
radA	Streptococcus pneumoniae R6	58.667	98.901	0.58
radA	Streptococcus pneumoniae TIGR4	58.667	98.901	0.58
radA	Streptococcus mitis NCTC 12261	58.667	98.901	0.58
radA	Streptococcus mitis SK321	58.444	98.901	0.578