Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   GCU45_RS18235 Genome accession   NZ_CP045295
Coordinates   4076483..4077442 (+) Length   319 a.a.
NCBI ID   WP_089549636.1    Uniprot ID   -
Organism   Paenibacillus cellulositrophicus strain KACC 16577     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4071483..4082442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GCU45_RS18210 - 4072020..4073243 (+) 1224 WP_089549633.1 extracellular solute-binding protein -
  GCU45_RS18215 - 4073273..4074139 (+) 867 WP_089549634.1 sugar ABC transporter permease -
  GCU45_RS18220 - 4074139..4074957 (+) 819 WP_152399880.1 carbohydrate ABC transporter permease -
  GCU45_RS18225 - 4075108..4075734 (-) 627 WP_152399881.1 DedA family protein -
  GCU45_RS18230 - 4076086..4076214 (-) 129 WP_076171988.1 DUF4023 family protein -
  GCU45_RS18235 ceuB 4076483..4077442 (+) 960 WP_089549636.1 ABC transporter permease Machinery gene
  GCU45_RS18240 - 4077439..4078395 (+) 957 WP_152399882.1 iron chelate uptake ABC transporter family permease subunit -
  GCU45_RS18245 - 4078392..4079150 (+) 759 WP_152399883.1 ABC transporter ATP-binding protein -
  GCU45_RS18250 - 4079388..4080365 (+) 978 WP_244364636.1 siderophore ABC transporter substrate-binding protein -
  GCU45_RS18255 - 4080469..4080807 (-) 339 WP_152399885.1 hypothetical protein -
  GCU45_RS18260 - 4080858..4081433 (-) 576 WP_152399886.1 hypothetical protein -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 35312.78 Da        Isoelectric Point: 10.1299

>NTDB_id=393193 GCU45_RS18235 WP_089549636.1 4076483..4077442(+) (ceuB) [Paenibacillus cellulositrophicus strain KACC 16577]
MKNTYLWTLWILLIVFSAASLFIGVKDISPLDLFHLTAEQKQVLWISRLPRLISIIIAGTSMSIIGLIMQQLTRNKFVSP
TTAGTMDSARFGILVALMVFGNAAPLVKMLVAFVFALLGTMIFMRILDKVKYKDAIFIPLVGLMFGNIVSSVTTFFAYKN
DLIQNMSSWLQGDFSMILKGRYEMLYISIPLLIIAYLFANRFTIAGMGEEFAVNLGLNYKAVVNIGLVIVAAISSVVILT
VGMIPFLGLVVPNIVTMYLGDHLKKSLLHTALLGAVFVLFCDILGRVIIFPYEISIGVTVGVIGSAIFIYLLLRRRAYT

Nucleotide


Download         Length: 960 bp        

>NTDB_id=393193 GCU45_RS18235 WP_089549636.1 4076483..4077442(+) (ceuB) [Paenibacillus cellulositrophicus strain KACC 16577]
ATGAAAAACACTTACCTGTGGACGCTGTGGATCCTGCTTATCGTATTCTCAGCCGCTTCTTTGTTTATCGGGGTGAAGGA
TATCTCCCCGCTGGATCTGTTTCATCTCACAGCCGAACAGAAGCAGGTGCTCTGGATCAGCCGACTGCCGCGCCTGATCA
GCATTATCATCGCCGGCACGAGCATGAGCATTATCGGCCTGATCATGCAGCAGCTGACGAGAAACAAGTTCGTGTCGCCG
ACGACGGCCGGAACGATGGATTCGGCAAGGTTCGGCATTTTGGTGGCCCTCATGGTGTTTGGTAACGCGGCGCCGCTGGT
GAAAATGCTGGTGGCCTTCGTTTTTGCCCTGCTGGGAACGATGATCTTCATGCGGATCCTGGATAAGGTCAAATACAAGG
ATGCGATTTTTATTCCGCTTGTCGGACTCATGTTCGGCAACATTGTCAGCTCGGTCACGACGTTTTTTGCCTATAAAAAC
GATCTGATCCAGAACATGTCCTCCTGGCTGCAGGGCGACTTTTCCATGATCCTCAAGGGCCGCTACGAGATGCTGTACAT
CAGCATTCCGCTCCTGATCATCGCCTATCTGTTCGCGAACCGCTTTACGATTGCGGGCATGGGGGAGGAGTTCGCGGTAA
ACCTGGGGCTTAACTATAAAGCCGTCGTCAACATCGGACTGGTCATCGTTGCCGCTATTTCATCGGTCGTGATTTTAACC
GTGGGGATGATTCCTTTTCTGGGCCTGGTCGTTCCGAACATCGTCACGATGTATCTGGGGGACCATCTGAAGAAAAGCCT
GCTACATACTGCACTGCTGGGAGCCGTGTTCGTGCTGTTCTGTGACATTCTGGGCCGGGTCATCATCTTTCCGTATGAAA
TCTCCATCGGCGTCACCGTCGGGGTGATTGGCAGCGCGATCTTTATCTATTTACTGCTGAGAAGAAGGGCTTATACATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(12-314)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.459

98.433

0.536

Multiple sequence alignment