Detailed information NTG0039318

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: NCGM2_RS23515
• Genome accession: NC_017549
• Coordinates: 5122190..5123194 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa NCGM2.S1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 5117190..5128194

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NCGM2_RS23500 (NCGM2_4750)	-	5117673..5118680 (+)	1008	WP_003092265.1	TolB family protein	-
NCGM2_RS23505 (NCGM2_4751)	mutS	5118806..5121373 (+)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
NCGM2_RS23510 (NCGM2_4752)	fdxA	5121440..5121763 (+)	324	WP_003092272.1	ferredoxin FdxA	-
NCGM2_RS23515 (NCGM2_4753)	rpoS	5122190..5123194 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
NCGM2_RS23520 (NCGM2_4754)	-	5123299..5124192 (-)	894	WP_003092335.1	peptidoglycan DD-metalloendopeptidase family protein	-
NCGM2_RS23525 (NCGM2_4755)	-	5124238..5124873 (-)	636	WP_073660134.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
NCGM2_RS23530 (NCGM2_4756)	surE	5124906..5125655 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
NCGM2_RS23535 (NCGM2_4757)	truD	5125643..5126710 (-)	1068	WP_003092343.1	tRNA pseudouridine(13) synthase TruD	-
NCGM2_RS23540 (NCGM2_4758)	ispF	5126707..5127180 (-)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
NCGM2_RS23545 (NCGM2_4759)	fghA	5127251..5128102 (-)	852	WP_003092349.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=39318 NCGM2_RS23515 WP_003113871.1 5122190..5123194(-) (rpoS) [Pseudomonas aeruginosa NCGM2.S1]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=39318 NCGM2_RS23515 WP_003113871.1 5122190..5123194(-) (rpoS) [Pseudomonas aeruginosa NCGM2.S1]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTTAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653