Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   GCU39_RS26680 Genome accession   NZ_CP045293
Coordinates   5916955..5917908 (+) Length   317 a.a.
NCBI ID   WP_152397450.1    Uniprot ID   -
Organism   Paenibacillus guangzhouensis strain KCTC 33171     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5911955..5922908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GCU39_RS31665 - 5912715..5912855 (-) 141 WP_193726642.1 hypothetical protein -
  GCU39_RS26665 hrpB 5913048..5915576 (+) 2529 WP_152397449.1 ATP-dependent helicase HrpB -
  GCU39_RS26670 - 5915623..5915985 (+) 363 WP_152396240.1 YojF family protein -
  GCU39_RS26675 bshB2 5915990..5916628 (+) 639 WP_152396241.1 bacillithiol biosynthesis deacetylase BshB2 -
  GCU39_RS26680 ceuB 5916955..5917908 (+) 954 WP_152397450.1 ABC transporter permease Machinery gene
  GCU39_RS26685 - 5917898..5918848 (+) 951 WP_152396242.1 iron chelate uptake ABC transporter family permease subunit -
  GCU39_RS26690 - 5918842..5919600 (+) 759 WP_152396243.1 ABC transporter ATP-binding protein -
  GCU39_RS26695 - 5919628..5920587 (+) 960 WP_152396244.1 siderophore ABC transporter substrate-binding protein -
  GCU39_RS26700 - 5920705..5920941 (+) 237 WP_193726643.1 hypothetical protein -
  GCU39_RS26705 - 5921102..5922277 (+) 1176 WP_152396246.1 MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35160.60 Da        Isoelectric Point: 9.8815

>NTDB_id=393172 GCU39_RS26680 WP_152397450.1 5916955..5917908(+) (ceuB) [Paenibacillus guangzhouensis strain KCTC 33171]
MKLRVLIPAFIVLSIISVFVGVKDISLLDLFSLTEDQIHILQVSRIPRLISIILAGVSMSICGLIMQQLSRNKFVSPTTA
GTMDSARFGILIAMLLFTSATPLQKMLVAFAFALIGTLLFMRILDRIKFKDTIFIPLVGLMFGNIVSSVATFFAYKYDLI
QNMSSWLQGDFSMIIKGHYELLYISIPLMIVAYLFANKFTVAGMGEEFSTNLGLHYKRVVNFGLIIVALSTASVVLTVGM
IPFLGLIIPNIVSLYHGDHLKNTLPHTALLGAVFVLFCDILGRIIIYPFEISISLMVGIIGSIIFVYLLMRRKAYGL

Nucleotide


Download         Length: 954 bp        

>NTDB_id=393172 GCU39_RS26680 WP_152397450.1 5916955..5917908(+) (ceuB) [Paenibacillus guangzhouensis strain KCTC 33171]
TTGAAATTGAGGGTTCTAATCCCTGCTTTTATCGTGCTCTCGATCATCTCGGTTTTCGTTGGCGTCAAAGACATATCCCT
GCTTGATTTGTTCTCGCTTACGGAAGACCAAATACATATTTTGCAGGTCAGCCGGATCCCTAGACTGATCAGTATCATCC
TCGCAGGCGTCAGCATGAGCATCTGCGGGCTGATCATGCAGCAGCTCAGCCGGAACAAGTTCGTCTCGCCGACGACGGCG
GGTACGATGGATTCAGCGAGGTTCGGTATTCTGATCGCGATGCTGCTCTTTACCTCGGCAACGCCGCTGCAGAAGATGTT
GGTCGCTTTTGCCTTCGCGCTCATCGGCACGCTGTTGTTCATGAGAATTCTCGATCGGATTAAGTTCAAAGACACGATCT
TCATACCACTCGTCGGGTTAATGTTCGGGAATATCGTCAGCTCTGTCGCAACCTTTTTCGCCTACAAATATGATCTGATA
CAGAATATGTCTTCTTGGCTTCAAGGGGATTTCTCCATGATTATCAAGGGGCATTATGAATTGCTCTATATCAGTATTCC
GCTGATGATCGTCGCCTATCTGTTCGCGAATAAGTTCACGGTGGCAGGTATGGGGGAGGAGTTCTCGACGAATCTGGGTC
TTCATTACAAACGCGTCGTGAATTTCGGATTAATCATTGTCGCACTCTCGACCGCTTCCGTCGTGTTAACCGTCGGGATG
ATTCCGTTCCTTGGACTCATTATTCCGAACATCGTCAGCCTGTATCATGGGGATCATCTGAAGAATACGTTGCCGCACAC
CGCGTTACTTGGCGCTGTATTCGTCTTGTTTTGCGATATATTGGGTCGGATTATCATTTATCCGTTCGAGATATCGATCA
GTCTTATGGTTGGGATTATCGGGAGTATCATTTTCGTGTATTTATTGATGAGGAGAAAGGCATATGGCTTATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.215

99.685

0.521

Multiple sequence alignment