Detailed information NTG0393162

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: GCU39_RS21995
• Genome accession: NZ_CP045293
• Coordinates: 4876090..4877457 (-)
• Length: 455 a.a.
• NCBI ID: WP_152395438.1
• Uniprot ID: -
• Organism: Paenibacillus guangzhouensis strain KCTC 33171
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 4871090..4882457

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GCU39_RS21965	ispF	4871139..4871621 (-)	483	WP_152395432.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GCU39_RS21970	ispD	4871618..4872316 (-)	699	WP_152395433.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GCU39_RS21975	-	4872476..4873558 (-)	1083	WP_152395434.1	PIN/TRAM domain-containing protein	-
GCU39_RS21980	-	4873726..4874115 (+)	390	WP_152395435.1	DUF1573 domain-containing protein	-
GCU39_RS21985	pssA	4874200..4874943 (-)	744	WP_152395436.1	CDP-diacylglycerol--serine O-phosphatidyltransferase	-
GCU39_RS21990	disA	4874998..4876074 (-)	1077	WP_152395437.1	DNA integrity scanning diadenylate cyclase DisA	-
GCU39_RS21995	radA	4876090..4877457 (-)	1368	WP_152395438.1	DNA repair protein RadA	Machinery gene
GCU39_RS22000	clpC	4877621..4880044 (-)	2424	WP_152395439.1	ATP-dependent protease ATP-binding subunit ClpC	-
GCU39_RS22005	-	4880084..4881145 (-)	1062	WP_152395440.1	protein arginine kinase	-
GCU39_RS22010	-	4881176..4881697 (-)	522	WP_152395441.1	UvrB/UvrC motif-containing protein	-
GCU39_RS22015	-	4881723..4882190 (-)	468	WP_152395442.1	CtsR family transcriptional regulator	-

Sequence

Protein

• Length: 455 a.a.
• Molecular weight: 49664.30 Da
• Isoelectric Point: 7.0808

>NTDB_id=393162 GCU39_RS21995 WP_152395438.1 4876090..4877457(-) (radA) [Paenibacillus guangzhouensis strain KCTC 33171]
MAKVKTKFYCTECGHETAKWFGKCPGCMSWNTMVEETQTVVKTQGMQSPIFHTKEKPQSIIHIESGKEPRIQTHIAELNR
VLGGGFVPGSLILVGGDPGIGKSTLLLQTSHALTTAGLKVLYVSGEESVRQTRLRADRLNALSESLFVLCETNLEQIEEA
IDEIQPDFLVIDSIQTVYQPSVASAPGSVSQVRECTAHFMRIAKVKGIATVLVGHVTKEGAIAGPRLLEHMVDCVLYFEG
ERHHTYRLLRAVKNRFGSTNEIGIFEMQETGLEEVSNPSELFLSERPLGVAGSTVVASVEGTRPVLVELQALVASTNFPS
PRRMSTGVDHQRMSLIIAVLEKRMGMFLQNQDAYLNVAGGVKLDEPAVDLAIAVSIASSFKDAPTQPYDVFFGEIGLTGE
VRAVSRVEQRVKEAHKLGFKRVIMPEKSIKGWKAPKGIEIIGVNTVAEALRAALG

Nucleotide

• Length: 1368 bp

>NTDB_id=393162 GCU39_RS21995 WP_152395438.1 4876090..4877457(-) (radA) [Paenibacillus guangzhouensis strain KCTC 33171]
ATGGCGAAAGTCAAAACAAAGTTTTACTGTACAGAATGCGGTCATGAGACAGCAAAATGGTTCGGCAAATGCCCAGGATG
CATGAGCTGGAACACGATGGTCGAAGAGACGCAGACGGTTGTCAAGACGCAAGGCATGCAATCGCCCATTTTTCATACGA
AAGAAAAACCGCAATCCATCATACATATAGAGAGTGGTAAAGAACCTCGCATTCAGACGCATATCGCTGAGCTGAATCGT
GTCCTCGGCGGCGGGTTCGTTCCTGGCTCATTAATTCTTGTAGGCGGTGATCCCGGGATCGGGAAATCCACATTATTGCT
GCAGACATCACACGCGCTTACAACGGCAGGACTCAAGGTTCTCTATGTATCTGGCGAGGAATCTGTTCGACAGACAAGGC
TGCGTGCGGATCGATTAAATGCATTGTCTGAATCTTTATTCGTCTTATGTGAGACGAACCTCGAGCAAATTGAGGAAGCG
ATTGATGAGATCCAGCCTGATTTTCTGGTCATCGACTCGATTCAGACGGTCTATCAGCCTTCTGTTGCTTCGGCGCCAGG
GAGTGTCTCCCAAGTTCGTGAATGTACGGCGCACTTTATGCGTATTGCTAAGGTAAAGGGAATTGCGACCGTGCTTGTAG
GGCATGTCACCAAAGAAGGAGCGATCGCAGGTCCGCGTTTATTGGAACATATGGTGGATTGCGTATTGTACTTCGAAGGG
GAGCGGCATCATACCTATCGATTGCTGCGTGCGGTGAAGAATCGGTTCGGTTCAACGAATGAGATCGGTATTTTCGAGAT
GCAAGAGACGGGGCTTGAGGAAGTGTCCAACCCATCGGAGCTGTTTTTGTCCGAACGTCCGCTTGGAGTAGCCGGTTCGA
CCGTCGTCGCTAGTGTGGAAGGGACTCGTCCTGTTCTAGTTGAACTCCAAGCCTTAGTCGCTTCGACGAATTTCCCGTCG
CCGCGGCGAATGTCGACAGGTGTCGATCATCAGCGGATGTCGCTCATTATTGCGGTGCTTGAGAAACGAATGGGCATGTT
CTTGCAGAATCAAGATGCTTATCTGAATGTTGCGGGTGGCGTGAAGCTCGATGAGCCTGCCGTTGACCTCGCGATCGCCG
TAAGTATTGCATCGAGTTTTAAGGATGCGCCAACTCAGCCATACGATGTGTTTTTCGGCGAAATTGGACTAACTGGGGAA
GTGCGGGCTGTATCTCGCGTGGAGCAGCGGGTTAAAGAGGCGCACAAGCTTGGGTTCAAGCGTGTGATTATGCCTGAGAA
AAGTATAAAGGGGTGGAAAGCGCCCAAGGGGATCGAAATTATCGGTGTGAACACCGTAGCGGAAGCGCTAAGAGCTGCAT
TAGGTTAG

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (344-427)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• AAA domain (AAA_25) (70-220)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	66.521	100	0.668
radA	Streptococcus mitis NCTC 12261	57.428	99.121	0.569
radA	Streptococcus pneumoniae Rx1	57.428	99.121	0.569
radA	Streptococcus pneumoniae D39	57.428	99.121	0.569
radA	Streptococcus pneumoniae R6	57.428	99.121	0.569
radA	Streptococcus pneumoniae TIGR4	57.428	99.121	0.569
radA	Streptococcus mitis SK321	57.206	99.121	0.567