Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GCU34_RS09785 Genome accession   NZ_CP045292
Coordinates   2050954..2052315 (-) Length   453 a.a.
NCBI ID   WP_072782761.1    Uniprot ID   A0A1M6F6X4
Organism   Flavobacterium haoranii strain KCTC 23008     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2045954..2057315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GCU34_RS09765 - 2046288..2046569 (-) 282 WP_072782770.1 F0F1 ATP synthase subunit epsilon -
  GCU34_RS09770 atpD 2046644..2048155 (-) 1512 WP_072782767.1 F0F1 ATP synthase subunit beta -
  GCU34_RS09775 - 2048504..2049838 (+) 1335 Protein_1959 ammonium transporter -
  GCU34_RS09780 - 2049884..2050918 (+) 1035 WP_072782764.1 aldo/keto reductase -
  GCU34_RS09785 radA 2050954..2052315 (-) 1362 WP_072782761.1 DNA repair protein RadA Machinery gene
  GCU34_RS09790 - 2052318..2053568 (-) 1251 WP_072782758.1 alpha/beta hydrolase -
  GCU34_RS09795 - 2053602..2054570 (-) 969 WP_072782757.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  GCU34_RS09800 panD 2054570..2054920 (-) 351 WP_072782754.1 aspartate 1-decarboxylase -
  GCU34_RS09805 panC 2054985..2055829 (-) 845 Protein_1965 pantoate--beta-alanine ligase -
  GCU34_RS09810 - 2055937..2056743 (+) 807 WP_072783410.1 glycogen/starch synthase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50116.59 Da        Isoelectric Point: 5.5852

>NTDB_id=393140 GCU34_RS09785 WP_072782761.1 2050954..2052315(-) (radA) [Flavobacterium haoranii strain KCTC 23008]
MSKVKTSFFCQSCGTSYSKWQGQCYACKEWNTIVEEIIQKEDKVAWKNNEKETSRVSKPLLIKEIDSDQEVRLNTTDNEL
NRVLGGGLVPGSLTLLGGEPGIGKSTLLLQISLKLPYKTLYVSGEESQKQIKMRAERILPNSDNCYILTETKTQNIFKQI
GDINPEVVIIDSIQTLHTDYIESSPGSISQIRECTAELIKFAKETNTPVILIGHITKDGTIAGPKILEHMVDTVLQFEGD
RNHVYRILRSLKNRFGSTAELGIYEMLGNGLREVENPSEILISHKEEELSGTAIACTLEGMRPLMIEIQALVSSAVYGTP
QRSTTGYNAKRLNMILAVLEKRAGFRLGTKDVFLNVTGGISVDDTAIDLAVVAAILSSNEDIAIEEGFCFAGEVGLSGEI
RPVNRIDQRIQEAEKLGFTTILVSKHNKISLKNTKIKMVLVSKIEDVVSELFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=393140 GCU34_RS09785 WP_072782761.1 2050954..2052315(-) (radA) [Flavobacterium haoranii strain KCTC 23008]
ATGAGTAAAGTTAAAACGTCGTTTTTTTGTCAAAGTTGTGGTACTTCTTATTCTAAATGGCAAGGCCAATGCTATGCTTG
TAAAGAATGGAATACCATAGTTGAAGAAATTATTCAAAAAGAAGACAAGGTTGCTTGGAAAAACAATGAGAAAGAAACTT
CTCGAGTTTCGAAGCCACTGTTAATAAAAGAAATTGATTCTGATCAGGAAGTCCGATTAAATACAACCGATAATGAATTA
AATCGTGTTCTTGGTGGCGGACTTGTGCCCGGTTCTTTAACGCTTTTAGGTGGTGAACCAGGTATTGGTAAAAGTACATT
ATTGTTGCAAATTTCGTTAAAGTTGCCTTATAAAACGCTTTATGTTTCTGGCGAAGAAAGTCAAAAGCAAATTAAAATGC
GTGCCGAACGTATTTTACCAAATAGCGATAATTGCTATATTTTAACCGAAACAAAAACACAAAATATTTTTAAACAAATT
GGAGATATTAATCCTGAAGTTGTAATTATTGATTCTATTCAAACATTACATACCGATTACATTGAATCTTCTCCAGGAAG
TATTTCTCAAATTAGAGAATGTACTGCCGAACTTATAAAATTTGCAAAAGAAACCAATACGCCAGTAATTCTTATTGGTC
ATATTACTAAAGATGGGACTATTGCAGGGCCAAAAATTCTAGAGCATATGGTCGATACTGTTCTTCAGTTTGAAGGCGAT
CGAAATCATGTGTATCGAATTTTACGTTCGCTTAAAAATAGATTTGGTTCTACTGCCGAATTGGGAATTTATGAAATGCT
CGGCAACGGTTTACGTGAAGTAGAAAATCCATCTGAAATTCTAATTTCTCATAAAGAAGAAGAATTGTCGGGAACTGCGA
TTGCTTGTACATTAGAAGGTATGCGTCCGTTAATGATTGAAATTCAGGCTTTAGTAAGTTCAGCAGTTTATGGAACTCCG
CAACGAAGCACAACAGGCTATAATGCGAAACGTTTAAACATGATTTTAGCGGTTCTTGAAAAACGTGCAGGATTTCGATT
AGGAACCAAAGATGTTTTTTTAAATGTTACAGGAGGAATTTCTGTTGATGATACTGCGATTGATTTGGCTGTTGTTGCGG
CAATTTTATCTTCAAATGAAGATATCGCTATCGAAGAAGGATTTTGTTTTGCAGGTGAAGTTGGACTTTCAGGAGAAATT
AGACCAGTTAATAGAATAGATCAGCGTATTCAAGAAGCTGAAAAACTTGGTTTTACAACAATATTAGTTTCTAAACACAA
TAAAATTTCACTTAAAAACACCAAAATTAAAATGGTACTCGTTTCAAAAATTGAAGATGTAGTAAGTGAGTTATTTGGAT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(70-219)

Subunit ChlI of Mg-chelatase (ChlI)

(335-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1M6F6X4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae D39

48.246

100

0.486
  radA Streptococcus mitis NCTC 12261

48.246

100

0.486
  radA Streptococcus pneumoniae Rx1

48.246

100

0.486
  radA Streptococcus pneumoniae R6

48.246

100

0.486
  radA Streptococcus pneumoniae TIGR4

48.246

100

0.486
  radA Streptococcus mitis SK321

48.026

100

0.483
  radA Bacillus subtilis subsp. subtilis str. 168

50

94.923

0.475

Multiple sequence alignment