Detailed information NTG0393129

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: GCS91_RS24925
• Genome accession: NZ_CP045291
• Coordinates: 5422660..5423880 (+)
• Length: 406 a.a.
• NCBI ID: WP_016449076.1
• Uniprot ID: A0AAU0LD35
• Organism: Delftia tsuruhatensis strain TR1180
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5417660..5428880

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GCS91_RS24905 (GCS91_24905)	coaD	5418430..5418930 (-)	501	WP_016449072.1	pantetheine-phosphate adenylyltransferase	-
GCS91_RS24910 (GCS91_24910)	rsmD	5419061..5419768 (-)	708	WP_016449073.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
GCS91_RS24915 (GCS91_24915)	-	5419765..5421126 (-)	1362	WP_046985885.1	M16 family metallopeptidase	-
GCS91_RS24920 (GCS91_24920)	-	5421153..5422631 (-)	1479	WP_026062084.1	M16 family metallopeptidase	-
GCS91_RS24925 (GCS91_24925)	pilA	5422660..5423880 (+)	1221	WP_016449076.1	signal recognition particle-docking protein FtsY	Machinery gene
GCS91_RS24930 (GCS91_24930)	-	5424135..5425124 (+)	990	WP_154835407.1	Bug family tripartite tricarboxylate transporter substrate binding protein	-
GCS91_RS24935 (GCS91_24935)	cutA	5425111..5425509 (-)	399	WP_154835409.1	divalent-cation tolerance protein CutA	-
GCS91_RS24940 (GCS91_24940)	-	5425562..5426587 (-)	1026	WP_017404218.1	2-dehydropantoate 2-reductase	-
GCS91_RS24945 (GCS91_24945)	-	5426606..5427364 (-)	759	WP_016449082.1	class II aldolase/adducin family protein	-
GCS91_RS24950 (GCS91_24950)	-	5427432..5427977 (-)	546	WP_016454136.1	MarR family winged helix-turn-helix transcriptional regulator	-

Sequence

Protein

• Length: 406 a.a.
• Molecular weight: 42448.31 Da
• Isoelectric Point: 5.5266

>NTDB_id=393129 GCS91_RS24925 WP_016449076.1 5422660..5423880(+) (pilA) [Delftia tsuruhatensis strain TR1180]
MFSFFKKKPTPSSAEISPADSSAAPEEAGIPATPPQDRAPDLPPGTPAPPAAADTGSAWWRKPFGGGKGDAAPPAAPAAP
TAAASTLAPADFIAAPEPTAKPEAEGASRQNWMQRLKAGLRKTGSSIATVFTGTQINDALYEELEDALLMADTGVKATEH
LLTDLRRRVKEAKATDPAAVKALLADALADLLRPLEKPLIIGEHQPTVVMVAGVNGAGKTTSIGKLTKHLADEGQSVLLA
AADTFRAAAREQLGVWANRNTVEIVSQEGGDPAAVSFDAVTAGRARKKDVVLVDTAGRLPTQLHLMEELRKIRRVVTKAD
ATAPHEVLLVIDGNTGQNALAQVRAFDDALQLTGLIVTKLDGTAKGGVLAAIAQERPIPVYFIGVGEKVEDLETFNAREF
AQALLS

Nucleotide

• Length: 1221 bp

>NTDB_id=393129 GCS91_RS24925 WP_016449076.1 5422660..5423880(+) (pilA) [Delftia tsuruhatensis strain TR1180]
ATGTTCAGTTTTTTCAAGAAAAAGCCCACCCCCTCCTCCGCCGAGATTTCCCCGGCGGACAGCAGCGCCGCGCCTGAAGA
GGCCGGCATTCCCGCAACCCCGCCGCAGGACCGCGCCCCAGACCTGCCCCCTGGCACGCCTGCCCCACCGGCCGCAGCCG
ACACCGGCAGCGCCTGGTGGCGCAAGCCCTTCGGCGGCGGCAAGGGCGATGCCGCCCCGCCTGCCGCACCCGCTGCACCC
ACTGCTGCTGCTTCCACGCTCGCGCCTGCCGACTTCATTGCCGCACCCGAGCCCACGGCCAAGCCCGAAGCCGAAGGCGC
CAGCCGCCAGAACTGGATGCAGCGCCTCAAGGCCGGACTGCGCAAGACCGGCAGCAGCATCGCCACGGTCTTCACCGGCA
CGCAGATCAACGATGCGCTGTACGAAGAGCTGGAAGACGCCCTGCTGATGGCCGACACCGGCGTCAAGGCCACCGAGCAC
CTGCTCACCGACCTGCGCCGCCGCGTCAAGGAAGCCAAGGCCACCGACCCCGCCGCCGTCAAGGCGTTGCTGGCCGATGC
ACTGGCCGACCTGCTGCGCCCGCTGGAAAAGCCGCTGATCATCGGCGAGCACCAGCCTACCGTGGTCATGGTCGCTGGCG
TCAACGGCGCAGGCAAGACCACCTCCATCGGCAAGCTGACCAAGCATCTGGCCGACGAAGGCCAGAGCGTGCTGCTGGCT
GCCGCCGACACCTTCCGCGCCGCCGCGCGCGAGCAGCTCGGCGTCTGGGCCAACCGCAACACGGTGGAGATCGTCAGCCA
GGAAGGCGGTGATCCTGCAGCCGTGAGCTTTGATGCCGTCACCGCCGGCCGCGCCCGCAAGAAGGATGTGGTGCTGGTGG
ACACGGCGGGCCGCCTGCCCACCCAGCTGCACCTGATGGAAGAGCTGCGCAAGATCCGCCGCGTGGTCACCAAGGCCGAT
GCCACGGCACCGCACGAGGTGCTGCTGGTCATCGACGGCAACACCGGCCAGAACGCGCTGGCCCAGGTGCGCGCCTTTGA
CGATGCACTGCAGCTCACGGGCCTGATCGTCACCAAGCTCGACGGCACGGCCAAGGGCGGCGTGCTGGCCGCCATTGCCC
AGGAACGACCGATCCCCGTGTACTTCATCGGCGTGGGCGAAAAGGTCGAAGACCTGGAGACCTTCAACGCCCGGGAATTC
GCGCAGGCGCTGCTGTCCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (206-405)

• SRP54-type protein, helical bundle domain (SRP54_N) (125-188)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	48.227	100	0.502