Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GBF15_RS14790 Genome accession   NZ_CP045277
Coordinates   3006715..3007344 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain LAU-OXA     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3001715..3012344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBF15_RS14775 helD 3001957..3004011 (-) 2055 WP_001295354.1 DNA helicase IV -
  GBF15_RS14780 yccF 3004134..3004580 (+) 447 WP_001261235.1 YccF domain-containing protein -
  GBF15_RS14785 yccS 3004590..3006752 (+) 2163 WP_000875061.1 YccS family putative transporter -
  GBF15_RS14790 sxy/tfoX 3006715..3007344 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  GBF15_RS14795 sulA 3007563..3008072 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  GBF15_RS14800 ompA 3008429..3009469 (+) 1041 WP_000750416.1 porin OmpA -
  GBF15_RS14805 matP 3009545..3009997 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  GBF15_RS14810 ycbZ 3010183..3011943 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=393101 GBF15_RS14790 WP_000839153.1 3006715..3007344(-) (sxy/tfoX) [Escherichia coli strain LAU-OXA]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=393101 GBF15_RS14790 WP_000839153.1 3006715..3007344(-) (sxy/tfoX) [Escherichia coli strain LAU-OXA]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment