Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   FDZ14_RS10780 Genome accession   NZ_CP045272
Coordinates   1910665..1911087 (-) Length   140 a.a.
NCBI ID   WP_047931978.1    Uniprot ID   -
Organism   Priestia megaterium strain FDU301     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1905665..1916087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDZ14_RS10750 (FDZ14_10660) - 1905784..1906269 (+) 486 WP_171776956.1 hypothetical protein -
  FDZ14_RS10755 (FDZ14_10665) - 1906568..1907113 (-) 546 WP_171776957.1 GNAT family N-acetyltransferase -
  FDZ14_RS10760 (FDZ14_10670) - 1907408..1908688 (+) 1281 WP_253948221.1 glycosyltransferase -
  FDZ14_RS10765 (FDZ14_10675) - 1908660..1909367 (+) 708 WP_233334985.1 TetR/AcrR family transcriptional regulator -
  FDZ14_RS10770 (FDZ14_10680) - 1909523..1910116 (+) 594 WP_028409296.1 hypothetical protein -
  FDZ14_RS10775 (FDZ14_10685) - 1910157..1910501 (-) 345 WP_047931977.1 DUF1516 family protein -
  FDZ14_RS10780 (FDZ14_10690) nucA/comI 1910665..1911087 (-) 423 WP_047931978.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  FDZ14_RS10785 (FDZ14_10695) - 1911228..1911692 (-) 465 WP_171776958.1 FixH family protein -
  FDZ14_RS10790 (FDZ14_10700) - 1911722..1913104 (-) 1383 WP_047931980.1 PepSY domain-containing protein -
  FDZ14_RS10795 (FDZ14_10705) - 1913256..1914242 (-) 987 WP_171776959.1 glycerophosphodiester phosphodiesterase family protein -
  FDZ14_RS10800 (FDZ14_10710) - 1914419..1915060 (-) 642 WP_034650500.1 response regulator transcription factor -
  FDZ14_RS10805 (FDZ14_10715) - 1915061..1915882 (-) 822 WP_171776960.1 histidine kinase -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15386.23 Da        Isoelectric Point: 4.4990

>NTDB_id=393061 FDZ14_RS10780 WP_047931978.1 1910665..1911087(-) (nucA/comI) [Priestia megaterium strain FDU301]
MKKIVSGILILVLAVIVMIEGNPLEQNSSTNTSYDEVITFPADRYPETAAHIQHAIDKGKSAVCTIDRDSAEENRRESLK
GIPTKSGYDRDEFPMAFCEEGGNGADIEYVKPSDNRGAGSWISHQVDEFPDGTKVLIEVK

Nucleotide


Download         Length: 423 bp        

>NTDB_id=393061 FDZ14_RS10780 WP_047931978.1 1910665..1911087(-) (nucA/comI) [Priestia megaterium strain FDU301]
TTGAAAAAAATTGTTTCTGGTATTTTAATTTTAGTATTAGCCGTTATTGTTATGATTGAAGGAAATCCGTTAGAGCAGAA
CTCTTCAACGAATACCTCCTACGATGAAGTAATTACCTTCCCTGCTGATCGTTACCCTGAAACTGCAGCGCACATTCAAC
ATGCAATCGATAAAGGAAAATCGGCTGTTTGTACAATCGACCGAGACAGTGCTGAAGAAAACCGCCGTGAGTCTTTAAAG
GGCATTCCGACTAAAAGCGGCTACGACCGAGATGAGTTTCCGATGGCCTTTTGTGAAGAAGGCGGAAACGGTGCAGACAT
TGAATATGTAAAGCCTTCAGACAACCGAGGCGCCGGATCTTGGATCTCACATCAAGTAGACGAGTTTCCAGACGGCACGA
AGGTTTTAATTGAAGTGAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(43-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

60.345

82.857

0.5

Multiple sequence alignment