Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   FDZ14_RS07805 Genome accession   NZ_CP045272
Coordinates   1388616..1388990 (-) Length   124 a.a.
NCBI ID   WP_171776724.1    Uniprot ID   A0A6M6DVQ4
Organism   Priestia megaterium strain FDU301     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1383616..1393990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDZ14_RS07785 (FDZ14_07735) - 1384190..1384558 (-) 369 WP_016765180.1 helix-turn-helix domain-containing protein -
  FDZ14_RS07790 (FDZ14_07740) - 1384801..1385316 (+) 516 WP_034655000.1 enoyl-CoA hydratase/isomerase family protein -
  FDZ14_RS36290 - 1385456..1385581 (+) 126 WP_016765178.1 hypothetical protein -
  FDZ14_RS07795 (FDZ14_07745) helD 1385826..1388144 (+) 2319 WP_034649592.1 RNA polymerase recycling motor HelD -
  FDZ14_RS07800 (FDZ14_07750) comJ 1388173..1388580 (-) 408 WP_016765176.1 competence protein ComJ -
  FDZ14_RS07805 (FDZ14_07755) nucA/comI 1388616..1388990 (-) 375 WP_171776724.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  FDZ14_RS07810 (FDZ14_07760) - 1389279..1389539 (+) 261 WP_013058561.1 metal-sensitive transcriptional regulator -
  FDZ14_RS07815 (FDZ14_07765) - 1389696..1391645 (+) 1950 WP_171776725.1 FUSC family protein -
  FDZ14_RS07820 (FDZ14_07770) - 1391681..1392499 (-) 819 WP_013058559.1 squalene/phytoene synthase family protein -
  FDZ14_RS07825 (FDZ14_07775) - 1392825..1393496 (+) 672 WP_034649601.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13677.90 Da        Isoelectric Point: 4.2601

>NTDB_id=393057 FDZ14_RS07805 WP_171776724.1 1388616..1388990(-) (nucA/comI) [Priestia megaterium strain FDU301]
MGHGAFLAPEKTEAEVNYDATLYFPLDRYPETGDHIRDTIAAGHSSVCTIDRDGAEANREESLKGYPTKTGYDRDEWPMA
MCEEGGAGADIRYISPSDNRGAGSWVGNQLEQYPDGTRVQFIVQ

Nucleotide


Download         Length: 375 bp        

>NTDB_id=393057 FDZ14_RS07805 WP_171776724.1 1388616..1388990(-) (nucA/comI) [Priestia megaterium strain FDU301]
ATGGGACATGGAGCTTTTTTAGCTCCTGAAAAAACGGAAGCTGAAGTAAATTATGATGCGACACTTTATTTTCCGTTAGA
CCGATATCCTGAAACGGGTGATCATATTCGTGACACGATTGCCGCTGGGCACTCTTCCGTTTGCACAATTGATCGCGACG
GTGCTGAAGCGAACCGAGAAGAATCCCTGAAAGGATATCCGACAAAAACAGGTTATGACCGTGATGAATGGCCAATGGCT
ATGTGCGAAGAAGGCGGAGCAGGAGCTGACATTCGCTATATTTCGCCTTCTGATAACCGTGGAGCCGGCTCATGGGTTGG
AAATCAGTTAGAACAGTATCCAGATGGTACACGCGTACAATTTATCGTTCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(31-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M6DVQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

66.387

95.968

0.637

Multiple sequence alignment