Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   FDZ14_RS04890 Genome accession   NZ_CP045272
Coordinates   810336..812063 (+) Length   575 a.a.
NCBI ID   WP_028410663.1    Uniprot ID   -
Organism   Priestia megaterium strain FDU301     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 805336..817063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDZ14_RS04865 (FDZ14_04860) - 805533..805766 (+) 234 WP_013059140.1 exodeoxyribonuclease VII small subunit -
  FDZ14_RS04870 (FDZ14_04865) - 805766..806662 (+) 897 WP_013059139.1 polyprenyl synthetase family protein -
  FDZ14_RS04875 (FDZ14_04870) dxs 806983..808884 (+) 1902 WP_013059138.1 1-deoxy-D-xylulose-5-phosphate synthase -
  FDZ14_RS04880 (FDZ14_04875) - 808881..809708 (+) 828 WP_013084988.1 TlyA family RNA methyltransferase -
  FDZ14_RS04885 (FDZ14_04880) argR 809870..810319 (+) 450 WP_013059136.1 transcriptional regulator ArgR -
  FDZ14_RS04890 (FDZ14_04885) recN 810336..812063 (+) 1728 WP_028410663.1 DNA repair protein RecN Machinery gene
  FDZ14_RS04895 (FDZ14_04890) spoIVB 812246..813526 (+) 1281 WP_016765539.1 SpoIVB peptidase -
  FDZ14_RS04900 (FDZ14_04895) spo0A 813754..814542 (+) 789 WP_013084985.1 sporulation transcription factor Spo0A -
  FDZ14_RS04905 (FDZ14_04900) - 814933..816264 (-) 1332 WP_047932614.1 peptide MFS transporter -
  FDZ14_RS04910 (FDZ14_04905) - 816577..816729 (-) 153 WP_013059130.1 YycC family protein -

Sequence

Protein


Download         Length: 575 a.a.        Molecular weight: 64679.20 Da        Isoelectric Point: 4.8014

>NTDB_id=393052 FDZ14_RS04890 WP_028410663.1 810336..812063(+) (recN) [Priestia megaterium strain FDU301]
MLAELSIKNFAIIDELSVSFEKGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRHGTDRAEIEGLFLFDEEQHPSHEK
AKQVGLEVEDGMIVLRRDITTNGKSICRINGKLVTLAILREVGQTLIDIHGQHEHQDLMNQDRHLTLLDQYGGEKVEEAL
TEYREVFSRYTSLKKQLDQLTENEQQMAHRLDLIQFQLDEIKAANLQLNEDEELNEERLKISNFEKIYTSLNDAYNALHG
EHQGLDWVGVAMNHTEDISSLEKNYAEISEIISSSFYQLEDASYKIRQQLDLLEFDPKRLDFIEARLNEINHLKRKYGQS
VDEILEYAAQIEDEIDRIENRDTHVSKIKEELNSVAQDLLVEANNVSAIRKKLAQELTDSIHHELQELYMAKTVFQIKFS
VVNAGKNDVEVNGERIKFTKDGIDNVEFYISTNPGEPLKPLAKVASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVS
GRVAQSIGEKIHAISVDSQVLCISHLPQVAAMADTHLFIAKEIKGDRTTTSVLPLTVDEKVKEIGRMIAGAEITSLTKEH
AKELLDLADKMKHTI

Nucleotide


Download         Length: 1728 bp        

>NTDB_id=393052 FDZ14_RS04890 WP_028410663.1 810336..812063(+) (recN) [Priestia megaterium strain FDU301]
TTGTTAGCTGAATTATCCATTAAAAACTTTGCGATTATTGATGAACTTTCTGTTTCATTTGAAAAAGGCTTAACGGTATT
AACAGGCGAAACAGGAGCGGGGAAATCGATTATTATTGATGCCATTTCATTGTTAGTAGGTGGAAGAGGCTCTTCGGAGT
TTGTACGCCACGGAACAGACAGAGCCGAAATTGAAGGACTTTTCTTATTTGATGAAGAACAGCATCCGAGTCACGAAAAA
GCCAAACAAGTCGGTTTGGAAGTGGAAGATGGAATGATTGTGCTTCGCCGAGATATCACTACAAATGGGAAAAGTATTTG
CCGCATCAACGGTAAGCTCGTAACGTTAGCTATCCTACGTGAAGTTGGACAGACGTTAATTGATATACATGGACAGCACG
AGCACCAAGATTTAATGAATCAAGATCGTCACTTAACTCTTCTTGATCAATATGGAGGAGAAAAAGTAGAAGAGGCTTTG
ACGGAGTATCGAGAGGTATTTTCTAGGTATACATCGCTAAAAAAGCAGCTTGATCAATTAACTGAAAATGAACAGCAGAT
GGCACATCGCCTCGATCTTATTCAATTTCAATTAGATGAAATCAAAGCGGCAAATTTGCAGCTGAACGAAGACGAGGAAC
TAAATGAAGAGCGTTTGAAGATTTCTAACTTTGAAAAGATCTATACGTCGCTAAACGATGCGTACAATGCCCTGCACGGT
GAACACCAAGGTTTAGATTGGGTCGGTGTAGCAATGAATCATACGGAGGATATTTCGTCACTGGAAAAAAACTATGCCGA
AATTTCTGAGATCATTTCATCGAGCTTCTATCAGCTAGAAGACGCATCTTATAAAATTCGTCAGCAGCTTGATTTATTAG
AATTTGATCCCAAACGCTTAGACTTTATTGAAGCGCGTTTAAATGAAATTAATCACTTAAAGCGTAAATACGGTCAAAGT
GTAGATGAAATTCTAGAATATGCAGCGCAAATTGAAGATGAAATTGATCGTATTGAAAATCGAGATACGCATGTGAGCAA
GATCAAAGAAGAGTTAAACAGTGTAGCACAGGATTTATTAGTAGAAGCTAATAACGTTTCAGCTATTCGAAAAAAACTTG
CTCAGGAGTTAACGGACAGTATCCATCATGAGCTTCAAGAACTGTATATGGCTAAGACCGTATTTCAAATTAAATTCTCT
GTTGTAAATGCAGGTAAAAATGACGTGGAAGTAAATGGAGAAAGAATAAAATTCACCAAAGACGGCATTGACAACGTAGA
ATTTTATATTTCTACTAATCCTGGTGAACCTTTAAAGCCTCTTGCAAAAGTAGCATCAGGAGGAGAACTGTCAAGAATTA
TGCTGGCGTTAAAAAGCATCTTCTCTAAGCATCAAGGCGTGACGTCCATTATCTTTGATGAAGTTGATACAGGCGTAAGT
GGAAGAGTAGCTCAATCGATCGGTGAAAAAATACATGCTATTTCTGTTGATTCACAAGTTCTCTGTATATCTCATCTGCC
TCAGGTAGCTGCGATGGCAGATACTCATCTCTTTATTGCTAAAGAGATAAAAGGTGATCGTACAACGACGTCTGTTCTTC
CGTTAACTGTTGATGAAAAAGTAAAAGAAATTGGTCGAATGATTGCAGGAGCTGAAATTACAAGCTTAACGAAGGAACAT
GCCAAAGAGCTTTTAGATTTAGCGGATAAGATGAAGCACACCATTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

65.104

100

0.652

Multiple sequence alignment