Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   GDV60_RS25520 Genome accession   NZ_CP045254
Coordinates   5736186..5736593 (-) Length   135 a.a.
NCBI ID   WP_029300456.1    Uniprot ID   -
Organism   Pseudomonas sp. DTU12.1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5731186..5741593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GDV60_RS25505 (GDV60_26215) - 5733179..5735230 (-) 2052 WP_029300448.1 methyl-accepting chemotaxis protein -
  GDV60_RS25510 (GDV60_26220) - 5735227..5735763 (-) 537 WP_029300451.1 chemotaxis protein CheW -
  GDV60_RS25515 (GDV60_26225) pilH 5735776..5736141 (-) 366 WP_029300454.1 twitching motility response regulator PilH -
  GDV60_RS25520 (GDV60_26230) pilG 5736186..5736593 (-) 408 WP_029300456.1 twitching motility response regulator PilG Regulator
  GDV60_RS25525 (GDV60_26235) gshB 5736833..5737786 (+) 954 WP_029300457.1 glutathione synthase -
  GDV60_RS25530 (GDV60_26240) - 5737864..5738763 (+) 900 WP_159909074.1 energy transducer TonB -
  GDV60_RS25535 (GDV60_26250) - 5738954..5739523 (+) 570 WP_029300463.1 YqgE/AlgH family protein -
  GDV60_RS25540 (GDV60_26255) ruvX 5739523..5739960 (+) 438 WP_005792259.1 Holliday junction resolvase RuvX -
  GDV60_RS25545 (GDV60_26260) pyrR 5740043..5740549 (+) 507 WP_029300467.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  GDV60_RS25550 (GDV60_26265) - 5740574..5741578 (+) 1005 WP_029300469.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14978.47 Da        Isoelectric Point: 6.9682

>NTDB_id=392966 GDV60_RS25520 WP_029300456.1 5736186..5736593(-) (pilG) [Pseudomonas sp. DTU12.1]
MEQHSNALKVMVIDDSKTIRRTAETLLKNVGCEVITAIDGFDALARIVDHHPHIIFVDIMMPRLDGYQTCALVKNNPAFK
DIPVIMLSSRDGLFDKAKGRIVGVDQFLTKPFSKEELLSAIKAYVPGFAAVEQAH

Nucleotide


Download         Length: 408 bp        

>NTDB_id=392966 GDV60_RS25520 WP_029300456.1 5736186..5736593(-) (pilG) [Pseudomonas sp. DTU12.1]
ATGGAACAGCATTCCAACGCCTTGAAAGTGATGGTGATCGACGATTCGAAAACGATTCGCCGCACCGCTGAAACGCTGTT
GAAGAACGTAGGGTGCGAAGTCATCACGGCCATCGACGGTTTTGATGCCCTGGCCAGGATCGTTGACCATCACCCGCACA
TCATCTTTGTCGACATCATGATGCCGCGCCTGGATGGCTATCAGACCTGCGCCCTGGTCAAGAACAACCCGGCGTTCAAG
GACATCCCGGTGATCATGCTGTCGTCCAGGGATGGCCTGTTCGACAAGGCCAAGGGGCGCATCGTCGGCGTCGATCAATT
TTTGACCAAGCCTTTCAGCAAGGAAGAACTGCTGAGTGCGATCAAGGCCTACGTGCCGGGTTTCGCCGCAGTAGAACAAG
CACATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

71.2

92.593

0.659

Multiple sequence alignment