Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GDV60_RS23390 Genome accession   NZ_CP045254
Coordinates   5284143..5285510 (-) Length   455 a.a.
NCBI ID   WP_029292126.1    Uniprot ID   A0AAP6YGH3
Organism   Pseudomonas sp. DTU12.1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5279143..5290510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GDV60_RS23370 (GDV60_24005) yjiA 5280122..5281081 (-) 960 WP_029292117.1 GTPase -
  GDV60_RS23375 (GDV60_24015) - 5281232..5281429 (-) 198 WP_029292120.1 YbdD/YjiX family protein -
  GDV60_RS23380 (GDV60_24020) - 5281445..5283511 (-) 2067 WP_029292122.1 carbon starvation CstA family protein -
  GDV60_RS23385 (GDV60_24025) - 5283685..5284053 (+) 369 WP_159908883.1 PilZ domain-containing protein -
  GDV60_RS23390 (GDV60_24030) radA 5284143..5285510 (-) 1368 WP_029292126.1 DNA repair protein RadA Machinery gene
  GDV60_RS23395 (GDV60_24035) - 5285546..5286076 (-) 531 WP_029292128.1 ankyrin repeat domain-containing protein -
  GDV60_RS23400 (GDV60_24045) - 5286214..5287755 (-) 1542 WP_159908885.1 catalase -
  GDV60_RS23405 (GDV60_24050) mscL 5288042..5288458 (+) 417 WP_029292131.1 large-conductance mechanosensitive channel protein MscL -
  GDV60_RS23410 (GDV60_24055) - 5288518..5289294 (-) 777 WP_159908887.1 ferredoxin--NADP reductase -
  GDV60_RS23415 (GDV60_24060) - 5289723..5290433 (+) 711 WP_159908889.1 LuxR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48699.18 Da        Isoelectric Point: 6.8987

>NTDB_id=392963 GDV60_RS23390 WP_029292126.1 5284143..5285510(-) (radA) [Pseudomonas sp. DTU12.1]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMIESGGAAAPTGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARVEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=392963 GDV60_RS23390 WP_029292126.1 5284143..5285510(-) (radA) [Pseudomonas sp. DTU12.1]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACGGAGTGCGGCGCGACCTTTCCCAAATGGGCGGGCCAGTGTGGCGAATG
CGGGGCGTGGAACACCCTCACTGAAACCATGATCGAAAGTGGCGGCGCCGCAGCGCCCACCGGTCGCGCAGGCTGGACCG
GCCAGCAAGCCCAGATCAAGACCCTGGCTGAAGTCAGCGTCGAAGAAATCCCGCGCTTTTCTACCGCTTCCGGCGAGCTT
GACCGGGTGCTCGGTGGCGGCCTAGTGGACGGCTCGGTGGTGTTGATCGGCGGCGATCCGGGGATCGGCAAATCGACCAT
CCTCCTGCAAACCCTGTGCAGCATCGCCAGCCGCATGCCGGCCTTGTATGTCACCGGCGAAGAATCCCAGCAGCAAGTGG
CCATGCGCGCCCGTCGCCTGGGCCTGCCCCAGGACCAGTTGCGGGTCATGACCGAGACCTGTATCGAAAGCATCATCGCC
ACCGCCCGTGTGGAAAAACCCAAGGTGATGGTGATCGACTCGATCCAGACGATCTTCACCGAGCAGCTGCAATCGGCGCC
GGGAGGGGTGTCCCAGGTGCGGGAGAGCGCGGCGTTGCTGGTGCGCTATGCCAAGCAAAGCGGTACGGCGATTTTCCTGG
TGGGCCATGTCACCAAGGAAGGCGCGTTGGCCGGCCCGCGGGTGCTGGAGCATATGGTCGATACGGTGCTGTATTTCGAG
GGCGAGTCCGATGGGCGCCTGCGCCTGTTGCGCGCGGTGAAAAACCGTTTTGGTGCGGTCAACGAGTTGGGGGTGTTCGC
CATGACGGACCGGGGGCTCAAAGAAGTCTCCAACCCCTCGGCGATCTTTCTGACACGCGCCCAGGAAGAAGTACCGGGCA
GTGTGGTAATGGCAACGTGGGAGGGCACCCGGCCGATGCTCGTGGAAGTCCAGGCCCTGGTGGACGACAGCCACCTGGCC
AACCCGCGCCGCGTGACCCTGGGCCTGGATCAGAACCGCCTGGCGATGCTGCTGGCGGTACTGCATCGCCACGGCGGGAT
CCCGACCCATGACCAGGACGTGTTCCTCAACGTGGTTGGCGGTGTAAAGGTACTGGAAACCGCGTCGGACCTAGCGTTGA
TGGCGGCGGTGATGTCCAGCCTGCGCAATCGGCCGTTGCCCCATGACCTGCTGGTATTTGGTGAGGTGGGCTTGTCGGGC
GAAGTGCGTCCGGTGCCCAGCGGCCAGGAGCGTCTGAAGGAAGCGGCCAAGCATGGCTTCAAGCGTGCCATCGTGCCCAA
GGGCAATGCACCGAAGGAGGCGCCACCGGGGTTGCAGGTGATTGCGGTGACGCGTCTGGAGCAGGCCCTGGACGCCTTGT
TCGAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(80-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.453

100

0.497
  radA Streptococcus pneumoniae Rx1

46.739

100

0.473
  radA Streptococcus pneumoniae R6

46.739

100

0.473
  radA Streptococcus pneumoniae TIGR4

46.739

100

0.473
  radA Streptococcus pneumoniae D39

46.739

100

0.473
  radA Streptococcus mitis SK321

46.93

100

0.47
  radA Streptococcus mitis NCTC 12261

46.711

100

0.468

Multiple sequence alignment