Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   GDV60_RS19895 Genome accession   NZ_CP045254
Coordinates   4522891..4523526 (-) Length   211 a.a.
NCBI ID   WP_029299724.1    Uniprot ID   A0AAJ3B5Y0
Organism   Pseudomonas sp. DTU12.1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4517891..4528526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GDV60_RS19860 (GDV60_20405) - 4518141..4518611 (-) 471 WP_159908537.1 (2Fe-2S)-binding protein -
  GDV60_RS19865 (GDV60_20410) murB 4519005..4520024 (-) 1020 WP_159908539.1 UDP-N-acetylmuramate dehydrogenase -
  GDV60_RS19870 (GDV60_20415) - 4520021..4520485 (-) 465 WP_029299713.1 low molecular weight protein-tyrosine-phosphatase -
  GDV60_RS19875 (GDV60_20420) kdsB 4520485..4521249 (-) 765 WP_159908541.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GDV60_RS19880 (GDV60_20425) - 4521246..4521431 (-) 186 WP_003174668.1 Trm112 family protein -
  GDV60_RS19885 (GDV60_20430) lpxK 4521456..4522466 (-) 1011 WP_104910739.1 tetraacyldisaccharide 4'-kinase -
  GDV60_RS19890 (GDV60_20435) - 4522466..4522894 (-) 429 WP_029299722.1 biopolymer transporter ExbD -
  GDV60_RS19895 (GDV60_20440) exbB 4522891..4523526 (-) 636 WP_029299724.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  GDV60_RS19900 (GDV60_20445) comA 4523602..4525857 (-) 2256 WP_256679322.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GDV60_RS19905 (GDV60_20450) - 4525994..4526509 (+) 516 WP_029299728.1 DUF2062 domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22953.06 Da        Isoelectric Point: 6.8772

>NTDB_id=392956 GDV60_RS19895 WP_029299724.1 4522891..4523526(-) (exbB) [Pseudomonas sp. DTU12.1]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPDHLLGQVWRWIKDKQLDKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=392956 GDV60_RS19895 WP_029299724.1 4522891..4523526(-) (exbB) [Pseudomonas sp. DTU12.1]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGCTCCATCGCCGCACTCGGCATCGTTGC
CGAACGCCTGTGGACCCTGCGCGCTAGCCGCGTGACCCCTGATCATCTGCTGGGGCAGGTCTGGCGCTGGATCAAGGACA
AGCAACTGGACAAGGAAAAGCTCAAGGAATTGCGGGCCAATTCCCCCCTGGGCGAGATCCTCGCCGCCGGCCTTGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAATGCATTGAAGAAGCCGCCGCCCGGGTTATCCACGAGCTGGAGCGCTATAT
CAATGCCCTGGGCACCATCGCCGCGATGGCACCGTTGCTTGGCTTGCTTGGCACGGTGCTGGGCATGATCGATATCTTCA
GCGCCTTTACCGGCTCGGGCATGACCACCAACGCCTCGGTATTGGCCGGGGGGATTTCCAAGGCCTTGATCACCACGGCT
GCGGGCTTGATGGTGGGTATCCCGGCGGTATTCTTCCACCGCTTCCTGCAGCGCCGCATCGATGAACTGGTGGTGGGTAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGGTCCAGGGCGACCGTGACGTCGACCTGGTCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.73

100

0.867

Multiple sequence alignment