Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GC087_RS19595 Genome accession   NZ_CP045247
Coordinates   4058596..4059978 (-) Length   460 a.a.
NCBI ID   WP_006121838.1    Uniprot ID   A0A9Q6N3S3
Organism   Pantoea sp. JZ2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4053596..4064978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GC087_RS19570 (GC087_19585) - 4054048..4054737 (-) 690 WP_205952610.1 molecular chaperone -
  GC087_RS19575 (GC087_19590) - 4054777..4055274 (-) 498 WP_226374626.1 fimbrial protein -
  GC087_RS19580 (GC087_19595) - 4055576..4056025 (-) 450 WP_006121842.1 hypothetical protein -
  GC087_RS19585 (GC087_19600) - 4056025..4056942 (-) 918 WP_324029107.1 winged helix-turn-helix domain-containing protein -
  GC087_RS19590 (GC087_19605) nadR 4057265..4058503 (-) 1239 WP_006121839.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  GC087_RS19595 (GC087_19610) radA 4058596..4059978 (-) 1383 WP_006121838.1 DNA repair protein RadA Machinery gene
  GC087_RS19600 (GC087_19615) serB 4059992..4060969 (-) 978 WP_033740188.1 phosphoserine phosphatase -
  GC087_RS19605 (GC087_19620) - 4061077..4061745 (+) 669 WP_033740187.1 YtjB family periplasmic protein -
  GC087_RS19610 (GC087_19625) yjjG 4061860..4062540 (-) 681 WP_006121835.1 pyrimidine 5'-nucleotidase -
  GC087_RS19615 (GC087_19630) rimI 4062560..4063000 (-) 441 WP_205955954.1 ribosomal protein S18-alanine N-acetyltransferase -
  GC087_RS19620 (GC087_19635) - 4062972..4063382 (-) 411 WP_006121833.1 DNA polymerase III subunit psi -
  GC087_RS19625 (GC087_19640) rsmC 4063488..4064519 (+) 1032 WP_039338798.1 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49464.08 Da        Isoelectric Point: 7.4215

>NTDB_id=392936 GC087_RS19595 WP_006121838.1 4058596..4059978(-) (radA) [Pantoea sp. JZ2]
MAKAAKRAFVCNECGADYPRWQGQCSACHAWNTITEVRIAASPAAARNERLSGYAGNAGTSRVQKLSEISLEALPRFSTS
FKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQVMCRLAESMKTLYVTGEESLQQVAMRAHRLGLPSDNLNMLSETSIE
QICLIAEQEQPQIMVIDSIQVMHMADIQSSPGSVAQVRETAAYLTRFAKTRGVAIIMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGMREVSNPSAIFLSRGEEITSGSSVMVLWEGTRPLLVEIQALVDH
SMMGNPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALMLSMVSSLRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERIAEAAKHGFKRAIVPAGNAPKKPIEGMRVYSAKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=392936 GC087_RS19595 WP_006121838.1 4058596..4059978(-) (radA) [Pantoea sp. JZ2]
TTGGCCAAAGCGGCAAAACGCGCATTTGTCTGTAACGAGTGCGGCGCAGATTATCCACGCTGGCAGGGGCAGTGCAGCGC
CTGTCACGCCTGGAACACGATTACCGAGGTCCGTATTGCGGCCTCACCGGCGGCGGCGCGCAATGAGCGCCTCAGCGGTT
ATGCAGGCAATGCCGGAACCAGTCGGGTGCAAAAGCTGTCCGAAATCAGTCTGGAAGCCTTGCCCCGTTTTTCGACCAGT
TTTAAAGAGTTTGACCGCGTACTGGGTGGCGGTGTGGTACCGGGCAGTGCCATTCTGATTGGCGGTAACCCCGGCGCCGG
GAAATCGACGCTGCTGTTGCAGGTGATGTGCCGTTTAGCCGAGAGCATGAAAACCCTCTACGTCACCGGGGAGGAGTCAT
TACAGCAGGTCGCTATGCGCGCCCATCGTCTGGGGTTGCCGAGTGACAATCTGAACATGCTGTCGGAAACCAGCATTGAG
CAGATCTGCCTGATTGCGGAGCAGGAGCAGCCGCAAATCATGGTGATCGACTCGATTCAGGTGATGCATATGGCGGATAT
CCAGTCGTCGCCGGGCAGCGTGGCGCAGGTGCGTGAAACGGCCGCCTATCTGACGCGTTTCGCTAAAACCCGTGGCGTGG
CAATTATCATGGTGGGCCATGTGACCAAAGACGGATCGCTGGCCGGGCCAAAAGTTCTGGAGCACTGCATTGACTGCTCC
GTCCTGCTGGACGGCGATGCCGATTCCCGCTTCCGGACGTTACGTAGCCATAAAAACCGCTTTGGTGCCGTCAATGAACT
TGGCGTATTTGCCATGACCGAGCAGGGCATGCGTGAGGTGAGCAACCCGTCCGCCATTTTCCTGTCGCGTGGTGAAGAGA
TCACGTCCGGCAGTTCGGTCATGGTGTTATGGGAAGGCACCCGTCCTTTACTGGTGGAGATTCAGGCGCTGGTGGATCAT
TCGATGATGGGCAATCCGCGTCGGGTTGCGGTCGGTCTGGAACAGAACCGCCTGGCCATTCTGCTGGCAGTGCTGCATCG
TCATGGCGGTTTGCAAATGGCGGATCAGGATGTGTTCGTCAACGTGGTCGGCGGCGTGAAAGTCACGGAAACCAGTGCTG
ACCTGGCCCTGATGCTGTCGATGGTGTCCAGCCTGCGCGATCGCCCTTTGCCGCAGGATCTGGTTATCTTTGGCGAGGTC
GGACTGGCCGGAGAGATTCGTCCGGTGCCCAGCGGACAGGAGCGCATTGCTGAAGCGGCTAAACATGGCTTTAAGCGGGC
GATCGTGCCGGCGGGTAACGCACCGAAAAAGCCGATTGAGGGCATGCGCGTATACAGCGCGAAGAAGCTGGCGGATGCGT
TGGCTATCCTTGATGATCTCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(87-225)

Subunit ChlI of Mg-chelatase (ChlI)

(347-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.59

100

0.487
  radA Streptococcus mitis NCTC 12261

43.736

98.913

0.433
  radA Streptococcus pneumoniae Rx1

45.012

93.696

0.422
  radA Streptococcus pneumoniae D39

45.012

93.696

0.422
  radA Streptococcus pneumoniae R6

45.012

93.696

0.422
  radA Streptococcus pneumoniae TIGR4

45.012

93.696

0.422
  radA Streptococcus mitis SK321

45.012

93.696

0.422

Multiple sequence alignment