Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GC090_RS17340 Genome accession   NZ_CP045241
Coordinates   3739317..3740699 (-) Length   460 a.a.
NCBI ID   WP_006121838.1    Uniprot ID   A0A9Q6N3S3
Organism   Pantoea sp. JZ29     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3734317..3745699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GC090_RS17310 (GC090_17305) - 3734770..3735261 (-) 492 WP_324020549.1 molecular chaperone -
  GC090_RS17315 - 3735210..3735416 (-) 207 WP_324021616.1 fimbria/pilus periplasmic chaperone -
  GC090_RS17320 (GC090_17310) - 3735498..3735995 (-) 498 WP_226374626.1 fimbrial protein -
  GC090_RS17325 (GC090_17315) - 3736297..3736746 (-) 450 WP_006121842.1 hypothetical protein -
  GC090_RS17330 (GC090_17320) - 3736746..3737663 (-) 918 WP_205959174.1 winged helix-turn-helix domain-containing protein -
  GC090_RS17335 (GC090_17325) nadR 3737986..3739224 (-) 1239 WP_006121839.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  GC090_RS17340 (GC090_17330) radA 3739317..3740699 (-) 1383 WP_006121838.1 DNA repair protein RadA Machinery gene
  GC090_RS17345 (GC090_17335) serB 3740713..3741690 (-) 978 WP_033740188.1 phosphoserine phosphatase -
  GC090_RS17350 (GC090_17340) - 3741798..3742466 (+) 669 WP_033740187.1 YtjB family periplasmic protein -
  GC090_RS17355 (GC090_17345) yjjG 3742580..3743260 (-) 681 WP_164482920.1 pyrimidine 5'-nucleotidase -
  GC090_RS17360 (GC090_17350) rimI 3743280..3743720 (-) 441 WP_006121834.1 ribosomal protein S18-alanine N-acetyltransferase -
  GC090_RS17365 (GC090_17355) - 3743692..3744102 (-) 411 WP_006121833.1 DNA polymerase III subunit psi -
  GC090_RS17370 (GC090_17360) rsmC 3744208..3745239 (+) 1032 WP_054634539.1 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49464.08 Da        Isoelectric Point: 7.4215

>NTDB_id=392900 GC090_RS17340 WP_006121838.1 3739317..3740699(-) (radA) [Pantoea sp. JZ29]
MAKAAKRAFVCNECGADYPRWQGQCSACHAWNTITEVRIAASPAAARNERLSGYAGNAGTSRVQKLSEISLEALPRFSTS
FKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQVMCRLAESMKTLYVTGEESLQQVAMRAHRLGLPSDNLNMLSETSIE
QICLIAEQEQPQIMVIDSIQVMHMADIQSSPGSVAQVRETAAYLTRFAKTRGVAIIMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGMREVSNPSAIFLSRGEEITSGSSVMVLWEGTRPLLVEIQALVDH
SMMGNPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALMLSMVSSLRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERIAEAAKHGFKRAIVPAGNAPKKPIEGMRVYSAKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=392900 GC090_RS17340 WP_006121838.1 3739317..3740699(-) (radA) [Pantoea sp. JZ29]
TTGGCCAAAGCGGCAAAACGCGCATTTGTCTGTAACGAGTGCGGCGCAGATTATCCACGCTGGCAGGGGCAGTGCAGCGC
CTGTCACGCCTGGAACACGATTACCGAGGTCCGTATTGCGGCCTCACCGGCGGCGGCGCGCAATGAGCGCCTCAGCGGTT
ATGCAGGCAATGCCGGAACCAGTCGGGTGCAAAAGCTGTCCGAAATCAGTCTGGAAGCCTTGCCCCGTTTTTCGACCAGT
TTTAAAGAGTTTGACCGCGTGCTGGGTGGCGGTGTGGTACCGGGCAGTGCCATTCTGATTGGCGGTAACCCCGGCGCCGG
GAAATCGACGCTGCTGTTGCAGGTGATGTGCCGTTTAGCCGAGAGCATGAAAACCCTTTACGTCACCGGGGAGGAGTCAT
TACAGCAGGTCGCTATGCGCGCCCATCGTCTGGGATTGCCGAGTGACAATCTGAACATGCTGTCGGAAACCAGCATTGAG
CAGATCTGCCTTATTGCGGAGCAGGAGCAGCCGCAAATCATGGTGATCGACTCGATTCAGGTGATGCACATGGCGGATAT
CCAGTCGTCGCCGGGCAGCGTGGCGCAGGTGCGTGAAACGGCCGCCTATCTGACGCGTTTCGCTAAAACCCGTGGCGTGG
CAATTATCATGGTGGGCCATGTGACCAAAGACGGATCGCTGGCCGGGCCAAAAGTTCTGGAGCACTGCATTGACTGCTCC
GTCCTGCTGGACGGCGATGCCGATTCCCGCTTCCGGACGTTACGTAGCCATAAAAACCGCTTTGGTGCCGTCAATGAACT
TGGCGTATTTGCCATGACCGAGCAGGGCATGCGTGAGGTGAGCAACCCGTCCGCCATTTTCCTGTCGCGTGGTGAAGAGA
TCACGTCCGGCAGTTCGGTCATGGTGTTATGGGAAGGCACCCGTCCTTTACTGGTTGAGATTCAGGCGCTGGTGGATCAT
TCGATGATGGGCAATCCGCGTCGGGTTGCGGTCGGTCTGGAACAGAACCGCCTGGCCATTCTGCTGGCAGTGCTGCATCG
TCATGGCGGTTTGCAAATGGCGGATCAGGATGTGTTCGTCAACGTGGTCGGCGGCGTGAAAGTCACGGAAACCAGTGCTG
ACCTGGCCCTGATGCTGTCGATGGTGTCCAGCCTGCGCGATCGCCCTTTGCCGCAGGATCTGGTTATCTTTGGCGAGGTC
GGACTGGCCGGAGAGATTCGTCCGGTGCCCAGCGGACAGGAGCGCATTGCTGAAGCGGCTAAACATGGCTTTAAGCGGGC
GATCGTGCCGGCGGGTAACGCACCGAAAAAGCCGATTGAGGGCATGCGCGTATACAGCGCGAAGAAGCTGGCGGATGCGT
TGGCTATCCTTGATGATCTCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(87-225)

Subunit ChlI of Mg-chelatase (ChlI)

(347-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.59

100

0.487
  radA Streptococcus mitis NCTC 12261

43.736

98.913

0.433
  radA Streptococcus pneumoniae Rx1

45.012

93.696

0.422
  radA Streptococcus pneumoniae D39

45.012

93.696

0.422
  radA Streptococcus pneumoniae R6

45.012

93.696

0.422
  radA Streptococcus pneumoniae TIGR4

45.012

93.696

0.422
  radA Streptococcus mitis SK321

45.012

93.696

0.422

Multiple sequence alignment