Detailed information NTG0392881

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HO392_RS13715
• Genome accession: NZ_CP053607
• Coordinates: 2808168..2809160 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081586.1
• Uniprot ID: Q540P1
• Organism: Escherichia coli strain NEB5-alpha_F'Iq
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2803168..2814160

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HO392_RS13695 (HO392_13705)	otnK	2803944..2805110 (+)	1167	WP_001393459.1	3-oxo-tetronate kinase	-
HO392_RS13700 (HO392_13710)	ygbL	2805202..2805840 (+)	639	WP_001278994.1	aldolase	-
HO392_RS13705 (HO392_13715)	ygbM	2805845..2806621 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
HO392_RS13710 (HO392_13720)	ygbN	2806710..2808074 (+)	1365	WP_000104441.1	GntP family transporter	-
HO392_RS13715 (HO392_13725)	rpoS	2808168..2809160 (-)	993	WP_000081586.1	RNA polymerase sigma factor RpoS	Regulator
HO392_RS13720 (HO392_13730)	nlpD	2809223..2810317 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
HO392_RS13725 (HO392_13735)	pcm	2810502..2811128 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
HO392_RS13730 (HO392_13740)	surE	2811122..2811883 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HO392_RS13735 (HO392_13745)	truD	2811864..2812913 (-)	1050	WP_000568970.1	tRNA pseudouridine(13) synthase TruD	-
HO392_RS13740 (HO392_13750)	ispF	2812910..2813389 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HO392_RS13745 (HO392_13755)	ispD	2813389..2814099 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37956.89 Da
• Isoelectric Point: 4.5886

>NTDB_id=392881 HO392_RS13715 WP_000081586.1 2808168..2809160(-) (rpoS) [Escherichia coli strain NEB5-alpha_F'Iq]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVELEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=392881 HO392_RS13715 WP_000081586.1 2808168..2809160(-) (rpoS) [Escherichia coli strain NEB5-alpha_F'Iq]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACTGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: Q540P1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715