Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BURCE16_RS11065 Genome accession   NZ_CP045235
Coordinates   2380375..2381751 (-) Length   458 a.a.
NCBI ID   WP_059490088.1    Uniprot ID   -
Organism   Burkholderia cepacia strain BC16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2375375..2386751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BURCE16_RS11045 (BURCE16_10900) cls 2375708..2377147 (+) 1440 WP_153488538.1 cardiolipin synthase -
  BURCE16_RS11050 (BURCE16_10905) - 2377212..2377691 (-) 480 WP_027787077.1 glutathione peroxidase -
  BURCE16_RS11055 (BURCE16_10910) - 2377828..2379759 (+) 1932 WP_153488539.1 ATP-binding cassette domain-containing protein -
  BURCE16_RS11060 (BURCE16_10915) - 2379962..2380228 (-) 267 WP_021159088.1 DUF2866 domain-containing protein -
  BURCE16_RS11065 (BURCE16_10920) radA 2380375..2381751 (-) 1377 WP_059490088.1 DNA repair protein RadA Machinery gene
  BURCE16_RS11070 (BURCE16_10925) alr 2381763..2382833 (-) 1071 WP_059687315.1 alanine racemase -
  BURCE16_RS11075 (BURCE16_10930) lplT 2383052..2384359 (+) 1308 WP_059687314.1 lysophospholipid transporter LplT -
  BURCE16_RS11080 (BURCE16_10935) thiD 2384418..2385227 (+) 810 WP_153488541.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  BURCE16_RS11085 (BURCE16_10940) - 2385246..2386211 (-) 966 WP_059494093.1 DUF1853 family protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48893.30 Da        Isoelectric Point: 6.7607

>NTDB_id=392857 BURCE16_RS11065 WP_059490088.1 2380375..2381751(-) (radA) [Burkholderia cepacia strain BC16]
MAKQKTVYVCSECGGQTPKWQGQCPSCQAWNTLVESVPEAPSAHRFQSLAKRAPVQRLVDIEAADVPRFSTGIGEFDRVL
GGGLVPGGVVLIGGDPGIGKSTLLLQSLADIASERRALYISGEESAAQIALRAQRLALLDGGAPADELKLLAEIQLEKIQ
AAIDTERPDVAVIDSIQTVYSEALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYF
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQVVPGSCVLVTQEGTRPLLVEVQALVDTAHV
PNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLA
GEIRPSPRGQERLREAAKLGFTSALIPKANAPKQPIEGLNVMAVDRLEQAIDRVRDLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=392857 BURCE16_RS11065 WP_059490088.1 2380375..2381751(-) (radA) [Burkholderia cepacia strain BC16]
GTGGCCAAACAGAAAACCGTATACGTCTGCAGCGAGTGCGGCGGACAGACCCCGAAGTGGCAAGGGCAATGCCCGTCGTG
CCAGGCCTGGAATACGCTCGTCGAATCGGTTCCTGAGGCGCCGTCGGCCCATCGTTTCCAGTCGCTCGCGAAGCGTGCGC
CCGTGCAGCGTCTCGTCGACATCGAAGCAGCCGACGTGCCGCGCTTCTCCACCGGCATCGGCGAATTCGACCGCGTGCTC
GGCGGCGGGCTCGTGCCGGGCGGCGTCGTACTGATCGGCGGCGACCCGGGTATCGGCAAATCGACGCTGCTGCTGCAGTC
GCTTGCGGACATCGCGAGCGAGCGGCGCGCGCTCTATATCAGCGGTGAGGAATCGGCCGCGCAGATCGCGTTGCGCGCGC
AACGGCTTGCGCTGCTCGACGGCGGTGCGCCGGCGGACGAACTGAAGCTGCTCGCCGAGATCCAGCTCGAGAAGATCCAG
GCCGCGATCGACACGGAACGGCCGGACGTGGCCGTGATCGACTCGATCCAGACCGTCTATTCGGAAGCGCTCACGTCGGC
CCCCGGCTCCGTCGCGCAGGTGCGGGAATGCGCGGCGCAGCTCACGCGCATCGCGAAGCAGTCGGGCACCGCGATCATCA
TGGTCGGGCACGTGACGAAGGAAGGCAACCTGGCCGGCCCGCGCGTGCTCGAGCACATCGTCGACACGGTGCTGTACTTC
GAAGGCGACACGCACTCGTCGTTCCGGCTCGTGCGCGCGTTCAAGAACCGCTTCGGCGCGGTCAACGAACTCGGCGTGTT
CGCGATGACGGAGCGCGGGCTGCGCGGCGTCGCGAATCCGTCCGCACTGTTCCTGTCGCAGCACGAGCAGGTCGTGCCCG
GCTCGTGCGTGCTCGTTACACAGGAGGGCACACGCCCGCTGCTCGTCGAAGTCCAGGCGCTCGTCGACACCGCGCACGTG
CCGAACCCGCGCCGGCTCGCGGTCGGCCTCGAACAGAACCGGCTCGCGATGCTGCTTGCGGTGCTGCACCGTCATGCGGG
CATCGCGTGCTTCGACCAGGACGTATTCCTCAATGCGGTGGGCGGCGTGAAGATCACCGAGCCGGCCGCCGACCTCGCGG
TGCTGCTCGCGATCCATTCGTCGATGCGCAACAAGGCGCTGCCGAAGGGGCTGATCGTATTCGGCGAAGTGGGGCTGGCG
GGCGAGATCCGGCCGTCGCCGCGCGGGCAGGAGCGGCTGCGCGAGGCCGCGAAGCTCGGTTTCACGTCCGCGCTGATCCC
GAAGGCGAACGCGCCGAAGCAGCCGATCGAAGGGCTGAACGTGATGGCCGTCGATCGGCTCGAGCAGGCGATCGACCGCG
TGCGCGATCTCGAGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.458

100

0.498
  radA Streptococcus pneumoniae Rx1

47.072

100

0.474
  radA Streptococcus pneumoniae D39

47.072

100

0.474
  radA Streptococcus pneumoniae R6

47.072

100

0.474
  radA Streptococcus pneumoniae TIGR4

47.072

100

0.474
  radA Streptococcus mitis SK321

47.38

100

0.474
  radA Streptococcus mitis NCTC 12261

47.046

99.782

0.469

Multiple sequence alignment