Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FD951_RS22790 Genome accession   NZ_CP045221
Coordinates   5059218..5060585 (-) Length   455 a.a.
NCBI ID   WP_023969442.1    Uniprot ID   -
Organism   Pseudomonas chlororaphis subsp. aurantiaca strain ARS 38     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5054218..5065585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD951_RS22765 (FD951_22765) - 5055058..5055255 (-) 198 WP_007930039.1 YbdD/YjiX family protein -
  FD951_RS22770 (FD951_22770) - 5055270..5057336 (-) 2067 WP_009045728.1 carbon starvation CstA family protein -
  FD951_RS22775 (FD951_22775) - 5057547..5058008 (+) 462 WP_023969439.1 isoprenylcysteine carboxylmethyltransferase family protein -
  FD951_RS22780 (FD951_22780) - 5058066..5058434 (+) 369 WP_023969440.1 PilZ domain-containing protein -
  FD951_RS22785 (FD951_22785) - 5058460..5059188 (-) 729 WP_023969441.1 hypothetical protein -
  FD951_RS22790 (FD951_22790) radA 5059218..5060585 (-) 1368 WP_023969442.1 DNA repair protein RadA Machinery gene
  FD951_RS22795 (FD951_22795) - 5060631..5061179 (-) 549 WP_023969443.1 ankyrin repeat domain-containing protein -
  FD951_RS22800 (FD951_22800) katB 5061350..5062891 (-) 1542 WP_023969444.1 catalase KatB -
  FD951_RS22805 (FD951_22805) mscL 5063178..5063582 (+) 405 WP_023969445.1 large-conductance mechanosensitive channel protein MscL -
  FD951_RS22810 (FD951_22810) - 5063640..5064416 (-) 777 WP_023969446.1 ferredoxin--NADP reductase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48780.30 Da        Isoelectric Point: 7.1317

>NTDB_id=392802 FD951_RS22790 WP_023969442.1 5059218..5060585(-) (radA) [Pseudomonas chlororaphis subsp. aurantiaca strain ARS 38]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMVESGGAAPPSGRTGWAGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIATRMAALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARLEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLSRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEPPPGLRIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=392802 FD951_RS22790 WP_023969442.1 5059218..5060585(-) (radA) [Pseudomonas chlororaphis subsp. aurantiaca strain ARS 38]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCAACCTTTCCCAAATGGGCCGGCCAGTGCGGCGAATG
CGGGGCCTGGAACACCCTGACCGAAACCATGGTGGAAAGCGGCGGCGCCGCGCCCCCCAGCGGCCGCACCGGCTGGGCCG
GGCAGCAAGCGCAGATCAAGACCCTGGCCGAGGTCAGCGTCGAAGAGATCCCACGCTTTTCCACGGCTTCCGGCGAACTG
GACCGGGTGCTCGGCGGCGGCCTGGTCGACGGTTCGGTGGTGCTGATCGGCGGCGACCCGGGGATCGGCAAGTCGACCAT
TCTGTTACAGACCTTGTGCAACATCGCCACCCGCATGGCGGCGCTCTATGTCACAGGCGAAGAATCGCAGCAACAGGTGG
CGATGCGCGCCCGACGCCTGGGCCTGCCCCAGGACCAGCTGCGGGTGATGACCGAGACCTGTATCGAAACCATCATCGCC
ACGGCCCGGCTGGAGAAGCCCAAGGTCATGGTGATCGACTCGATCCAGACCATCTTCACCGAGCAACTGCAATCGGCCCC
TGGCGGTGTTTCCCAGGTGCGCGAAAGCGCGGCGCTGCTGGTGCGCTACGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TGGGCCACGTGACCAAGGAGGGCGCGCTGGCCGGGCCGCGGGTCCTCGAGCACATGGTCGACACCGTGCTGTATTTCGAA
GGTGAGTCCGACGGCCGCCTGCGCTTGCTGCGGGCGGTGAAGAACCGCTTCGGCGCGGTCAACGAGCTCGGCGTGTTCGG
CATGACCGACCGCGGCCTGAAAGAGGTTTCCAACCCGTCGGCGATCTTTCTCAGCCGTGCCCAGGAAGAGGTCCCGGGCA
GCGTGGTCATGGCCACCTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTCCAGGCGCTGGTGGATGACAGCCACCTGGCC
AACCCGCGGCGGGTCACCCTGGGCCTGGACCAGAACCGCCTGGCGATGCTGCTGGCGGTGCTGCACCGCCACGGCGGCAT
TCCGACCCACGATCAGGACGTGTTCCTCAACGTGGTCGGCGGGGTCAAGGTGCTGGAAACCGCGTCCGACCTGGCGCTGA
TGGCGGCGGTGATGTCCAGCCTGCGCAACCGGCCGTTGCCCCACGATCTGCTGGTGTTCGGCGAAGTTGGCCTGTCCGGC
GAGGTACGCCCGGTGCCGAGCGGCCAGGAGCGCCTCAAGGAGGCGGCCAAGCACGGTTTCAAACGGGCCATCGTGCCCAA
GGGCAATGCCCCGAAAGAGCCGCCGCCGGGCCTGCGGATCATCGCGGTAACCCGCCTGGAACAGGCGCTGGATGCGCTGT
TCGAATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

100

0.488
  radA Streptococcus pneumoniae Rx1

45.87

100

0.464
  radA Streptococcus pneumoniae R6

45.87

100

0.464
  radA Streptococcus pneumoniae TIGR4

45.87

100

0.464
  radA Streptococcus pneumoniae D39

45.87

100

0.464
  radA Streptococcus mitis SK321

46.053

100

0.462
  radA Streptococcus mitis NCTC 12261

45.833

100

0.459

Multiple sequence alignment