Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RUMAL_RS11805 Genome accession   NC_014833
Coordinates   2617056..2618432 (+) Length   458 a.a.
NCBI ID   WP_013498946.1    Uniprot ID   E6UDC8
Organism   Ruminococcus albus 7 = DSM 20455     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2612056..2623432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RUMAL_RS11785 (Rumal_2327) - 2612294..2612860 (-) 567 WP_013498942.1 DUF3592 domain-containing protein -
  RUMAL_RS22510 (Rumal_2328) - 2613058..2614293 (-) 1236 WP_050793286.1 dockerin type I domain-containing protein -
  RUMAL_RS11795 (Rumal_2329) glpK 2614409..2615914 (-) 1506 WP_013498944.1 glycerol kinase GlpK -
  RUMAL_RS11800 (Rumal_2330) - 2616757..2617047 (+) 291 WP_013498945.1 Dabb family protein -
  RUMAL_RS11805 (Rumal_2331) radA 2617056..2618432 (+) 1377 WP_013498946.1 DNA repair protein RadA Machinery gene
  RUMAL_RS11810 (Rumal_2332) rplU 2618593..2618904 (+) 312 WP_013498947.1 50S ribosomal protein L21 -
  RUMAL_RS11815 (Rumal_2333) - 2618921..2619232 (+) 312 WP_013498948.1 ribosomal-processing cysteine protease Prp -
  RUMAL_RS11820 (Rumal_2334) rpmA 2619269..2619550 (+) 282 WP_013498949.1 50S ribosomal protein L27 -
  RUMAL_RS11825 (Rumal_2335) - 2619705..2620460 (+) 756 WP_013498950.1 hypothetical protein -
  RUMAL_RS11830 (Rumal_2336) obgE 2620522..2621799 (+) 1278 WP_013498951.1 GTPase ObgE -
  RUMAL_RS11835 (Rumal_2337) - 2621811..2622236 (+) 426 WP_013498952.1 Mini-ribonuclease 3 -
  RUMAL_RS11840 (Rumal_2338) - 2622242..2622985 (+) 744 WP_013498953.1 YebC/PmpR family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49652.18 Da        Isoelectric Point: 5.2685

>NTDB_id=39280 RUMAL_RS11805 WP_013498946.1 2617056..2618432(+) (radA) [Ruminococcus albus 7 = DSM 20455]
MAKAKSAYVCSNCGFEASKWNGKCPECGEWNTFEEVEIQVSARTAGKSRGSAVKDISDSILNIGAVDASVREIRYDTGMN
ELNRVLGGGLVKGSLVLLGGEPGIGKSTMLLQICQTMGDDHTILYVSGEESARQIKLRADRLGVDNENLYLLAETDAESI
CAAIVKEKPEIVIIDSIQTMSISGISSAQGSVTQVRECTNMFMRTAKSEEIPIFIVGHVNKDGAIAGPKVMEHIVDCVLY
FEGQRNMTYRILRAVKNRFGSTNEIGVFEMADAGLLEVDNPSMLMLEGRPLNVSGSCVACVMEGSRPIMAEVQALVSKSS
TSQPKRTATGFDYYRMSIILAVLEKRLGYFFGGLDVFINIVGGLKLDDTAADLTVAMALYSSVTDKVVDEKTIALGEIGL
GGELRNITHAEQRIQEAERMGFEKVIIPYYAAKKINAAKYGIKVIGARSIKEAFKELG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=39280 RUMAL_RS11805 WP_013498946.1 2617056..2618432(+) (radA) [Ruminococcus albus 7 = DSM 20455]
ATGGCTAAGGCGAAAAGCGCTTATGTATGCTCGAACTGCGGTTTTGAAGCAAGCAAGTGGAACGGAAAATGCCCCGAATG
CGGCGAATGGAACACCTTTGAAGAGGTGGAGATACAGGTATCTGCGAGAACTGCGGGCAAAAGCAGGGGTTCGGCTGTAA
AGGATATCTCCGACAGCATACTGAACATCGGTGCAGTGGATGCAAGTGTCCGCGAGATACGCTATGACACGGGAATGAAT
GAACTCAACAGAGTGCTTGGCGGCGGACTTGTAAAGGGTTCGCTGGTACTTCTGGGCGGTGAACCCGGCATAGGCAAATC
CACCATGCTTTTGCAGATATGTCAGACCATGGGCGACGACCATACTATATTATATGTATCGGGTGAGGAATCCGCAAGGC
AGATAAAGCTGAGGGCTGACAGGCTGGGTGTGGATAACGAGAACCTCTACCTGCTGGCTGAAACGGACGCTGAAAGCATA
TGCGCGGCGATAGTCAAGGAAAAGCCCGAGATAGTCATTATCGACTCGATACAGACCATGAGCATAAGCGGAATATCCTC
GGCGCAGGGGTCGGTGACACAGGTGCGCGAGTGTACCAATATGTTCATGAGGACGGCGAAATCCGAGGAGATACCCATAT
TCATCGTGGGTCACGTAAACAAGGACGGCGCTATCGCAGGTCCTAAGGTCATGGAACATATCGTTGACTGCGTGCTGTAC
TTTGAGGGTCAGAGGAATATGACTTACAGGATACTCCGCGCGGTGAAGAACAGATTTGGTTCAACCAATGAGATAGGCGT
TTTTGAAATGGCTGACGCGGGACTTCTGGAGGTGGACAACCCCTCGATGCTGATGCTTGAGGGCAGACCGCTGAACGTTT
CGGGCAGCTGTGTAGCCTGCGTAATGGAGGGTTCGCGCCCTATCATGGCGGAGGTTCAGGCACTGGTATCGAAAAGCAGT
ACCTCTCAGCCAAAGAGGACGGCTACGGGATTTGACTATTACAGGATGTCCATAATACTGGCGGTGCTTGAAAAGCGGCT
GGGGTATTTCTTCGGCGGGCTGGACGTATTTATTAATATAGTAGGCGGTCTGAAGCTGGACGATACGGCGGCTGACCTTA
CAGTGGCTATGGCGCTGTATTCAAGCGTGACGGACAAGGTGGTTGACGAAAAGACCATCGCACTGGGCGAGATAGGTCTG
GGCGGAGAACTCAGGAACATCACCCATGCGGAACAGCGCATACAGGAAGCCGAGAGAATGGGGTTTGAAAAGGTCATAAT
CCCCTATTATGCGGCTAAGAAGATAAACGCCGCAAAGTACGGCATAAAGGTCATAGGTGCAAGGTCGATAAAGGAAGCTT
TCAAGGAACTGGGATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(348-429)

AAA domain (AAA_25)

(74-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E6UDC8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50

99.563

0.498
  radA Streptococcus pneumoniae Rx1

49.563

100

0.496
  radA Streptococcus pneumoniae D39

49.563

100

0.496
  radA Streptococcus pneumoniae R6

49.563

100

0.496
  radA Streptococcus pneumoniae TIGR4

49.563

100

0.496
  radA Streptococcus mitis NCTC 12261

49.345

100

0.493
  radA Streptococcus mitis SK321

49.345

100

0.493

Multiple sequence alignment