Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GC231_RS09065 Genome accession   NZ_CP045213
Coordinates   1894145..1894774 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain EH41     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1889145..1899774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GC231_RS09045 (GC231_09150) ycbZ 1889535..1891295 (-) 1761 WP_000156526.1 AAA family ATPase -
  GC231_RS09050 (GC231_09155) matP 1891481..1891933 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  GC231_RS09055 (GC231_09160) ompA 1892008..1893060 (-) 1053 WP_000750419.1 porin OmpA -
  GC231_RS09060 (GC231_09165) sulA 1893417..1893926 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  GC231_RS09065 (GC231_09170) sxy/tfoX 1894145..1894774 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  GC231_RS09070 (GC231_09175) yccS 1894737..1896899 (-) 2163 WP_228400298.1 YccS family putative transporter -
  GC231_RS09075 (GC231_09180) yccF 1896909..1897355 (-) 447 WP_001261235.1 YccF domain-containing protein -
  GC231_RS09080 (GC231_09185) helD 1897478..1899532 (+) 2055 WP_001315388.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=392722 GC231_RS09065 WP_000839153.1 1894145..1894774(+) (sxy/tfoX) [Escherichia coli strain EH41]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=392722 GC231_RS09065 WP_000839153.1 1894145..1894774(+) (sxy/tfoX) [Escherichia coli strain EH41]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment