Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   HO394_RS00420 Genome accession   NZ_CP053604
Coordinates   91213..91653 (-) Length   146 a.a.
NCBI ID   WP_000360904.1    Uniprot ID   P36647
Organism   Escherichia coli strain NEB10-beta     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 86213..96653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HO394_RS00400 (HO394_00400) coaE 86703..87323 (-) 621 WP_001269520.1 dephospho-CoA kinase -
  HO394_RS22560 - 87348..87392 (+) 45 WP_120795372.1 protein YacM -
  HO394_RS00405 (HO394_00405) guaC 87548..88591 (+) 1044 WP_001217338.1 GMP reductase -
  HO394_RS00410 (HO394_00410) hofC 88626..89828 (-) 1203 WP_000157266.1 protein transport protein HofC -
  HO394_RS00415 (HO394_00415) pilB 89818..91203 (-) 1386 WP_001025145.1 type II secretion system protein GspE Machinery gene
  HO394_RS00420 (HO394_00420) pilA 91213..91653 (-) 441 WP_000360904.1 prepilin peptidase-dependent pilin Machinery gene
  HO394_RS00425 (HO394_00425) nadC 91856..92749 (-) 894 WP_001135174.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HO394_RS00430 (HO394_00430) ampD 92837..93388 (+) 552 WP_000923721.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  HO394_RS00435 (HO394_00435) ampE 93385..94239 (+) 855 WP_000172005.1 beta-lactamase regulator AmpE -
  HO394_RS00440 (HO394_00440) aroP 94282..95655 (-) 1374 WP_000969915.1 aromatic amino acid transporter AroP -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 15621.75 Da        Isoelectric Point: 4.3938

>NTDB_id=392680 HO394_RS00420 WP_000360904.1 91213..91653(-) (pilA) [Escherichia coli strain NEB10-beta]
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN

Nucleotide


Download         Length: 441 bp        

>NTDB_id=392680 HO394_RS00420 WP_000360904.1 91213..91653(-) (pilA) [Escherichia coli strain NEB10-beta]
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGGCTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P36647

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Haemophilus influenzae 86-028NP

43.089

84.247

0.363