Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   GBK02_RS16535 Genome accession   NZ_CP045202
Coordinates   3402587..3403561 (-) Length   324 a.a.
NCBI ID   WP_203467688.1    Uniprot ID   A0A974SYW2
Organism   Dechloromonas sp. TW-R-39-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3397587..3408561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBK02_RS16515 (GBK02_16440) - 3398797..3399357 (-) 561 WP_203467685.1 OmpA family protein -
  GBK02_RS16520 (GBK02_16445) - 3399426..3401051 (-) 1626 WP_239003089.1 NAD(P)/FAD-dependent oxidoreductase -
  GBK02_RS16525 (GBK02_16450) ftsX 3401044..3401943 (-) 900 WP_203467686.1 permease-like cell division protein FtsX -
  GBK02_RS16530 (GBK02_16455) ftsE 3401940..3402590 (-) 651 WP_203467687.1 cell division ATP-binding protein FtsE -
  GBK02_RS16535 (GBK02_16460) pilA 3402587..3403561 (-) 975 WP_203467688.1 signal recognition particle-docking protein FtsY Machinery gene
  GBK02_RS16540 (GBK02_16465) - 3403693..3405051 (+) 1359 WP_203467689.1 pitrilysin family protein -
  GBK02_RS16545 (GBK02_16470) - 3405068..3406357 (+) 1290 WP_239003091.1 pitrilysin family protein -
  GBK02_RS16550 (GBK02_16475) rsmD 3406354..3406896 (+) 543 WP_203467691.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  GBK02_RS16555 (GBK02_16480) coaD 3406893..3407390 (+) 498 WP_203467692.1 pantetheine-phosphate adenylyltransferase -
  GBK02_RS16560 (GBK02_16485) - 3407407..3407664 (+) 258 WP_203467693.1 YfhL family 4Fe-4S dicluster ferredoxin -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 34823.11 Da        Isoelectric Point: 6.8856

>NTDB_id=392671 GBK02_RS16535 WP_203467688.1 3402587..3403561(-) (pilA) [Dechloromonas sp. TW-R-39-2]
MFSFLKKSAADPKVDAAPTPDAAPSWRERLFKGLAKTRAQLGGKLKSIFSRGKVDDELLEELEELLLTSDVGVEATMHLL
GELKKAAKRDKLETPEAIQKALSDALLETLQPLEQALDVSGHKPYVIMIAGVNGAGKTTSIGKLAKYFQNQGKSVLLAAG
DTFRAAAREQLETWGERNNVTVIAQDNGDPAAVVFDAISAAKARGIDIVLADTAGRLPTQLHLMEEIAKVRRVIQKVEPT
GPHETLLVLDANIGQNALQQVKAFDKAINVTGLVVTKLDGSAKGGVVAAIARQCPKPIRFIGVGEQIDDLRPFSAKDFVD
ALFE

Nucleotide


Download         Length: 975 bp        

>NTDB_id=392671 GBK02_RS16535 WP_203467688.1 3402587..3403561(-) (pilA) [Dechloromonas sp. TW-R-39-2]
ATGTTCAGTTTCCTGAAAAAATCCGCTGCCGACCCCAAGGTTGACGCGGCTCCCACACCCGATGCCGCCCCTTCATGGCG
CGAACGCCTCTTCAAGGGCCTGGCCAAGACCCGCGCCCAGCTCGGCGGCAAGCTCAAGTCGATTTTCTCGCGCGGCAAGG
TCGATGACGAGCTGCTGGAGGAGCTGGAAGAGCTTCTGCTGACGAGCGATGTCGGCGTCGAGGCGACGATGCATCTGCTC
GGCGAGTTGAAGAAAGCCGCCAAGCGCGACAAGCTGGAAACCCCGGAAGCCATCCAGAAAGCCTTGTCCGATGCCTTGCT
CGAAACCCTGCAACCGCTCGAACAGGCGCTTGATGTCAGCGGCCACAAGCCCTACGTGATCATGATTGCCGGCGTCAATG
GTGCCGGCAAGACAACCTCGATCGGCAAGCTGGCCAAGTATTTCCAGAACCAGGGCAAGAGCGTCTTGCTGGCCGCTGGC
GATACCTTCCGCGCCGCCGCACGCGAACAGCTCGAAACCTGGGGCGAGCGCAATAACGTCACTGTCATCGCCCAGGACAA
CGGTGATCCGGCCGCCGTGGTGTTCGATGCCATTTCAGCCGCCAAGGCGCGTGGCATCGATATCGTGTTGGCCGATACGG
CCGGTCGCCTGCCGACCCAGCTGCACCTGATGGAAGAAATCGCCAAGGTGCGTCGCGTCATTCAGAAGGTCGAACCGACC
GGGCCGCACGAAACCCTGCTGGTGCTCGATGCCAACATCGGCCAGAACGCGCTGCAGCAGGTCAAGGCGTTCGACAAGGC
AATCAATGTCACCGGCCTGGTCGTCACCAAGCTCGATGGCTCGGCCAAGGGCGGCGTGGTTGCGGCAATTGCCCGACAGT
GCCCGAAGCCGATCCGCTTCATCGGGGTGGGCGAGCAGATCGACGATCTGCGTCCCTTCTCGGCCAAAGATTTCGTCGAC
GCCCTGTTCGAATGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(125-323)

SRP54-type protein, helical bundle domain (SRP54_N)

(41-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

61.489

95.37

0.586

Multiple sequence alignment