Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GBK02_RS09920 Genome accession   NZ_CP045202
Coordinates   2064515..2065873 (+) Length   452 a.a.
NCBI ID   WP_203466519.1    Uniprot ID   -
Organism   Dechloromonas sp. TW-R-39-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2059515..2070873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBK02_RS09895 (GBK02_09840) rimI 2059671..2060132 (+) 462 WP_203466514.1 ribosomal protein S18-alanine N-acetyltransferase -
  GBK02_RS09900 (GBK02_09845) - 2060129..2060935 (+) 807 WP_203466515.1 uracil-DNA glycosylase family protein -
  GBK02_RS09905 (GBK02_09850) lplT 2060962..2062227 (-) 1266 WP_203466516.1 lysophospholipid transporter LplT -
  GBK02_RS09910 (GBK02_09855) - 2062521..2063423 (+) 903 WP_203466517.1 LysR family transcriptional regulator -
  GBK02_RS09915 (GBK02_09860) alr 2063420..2064514 (+) 1095 WP_203466518.1 alanine racemase -
  GBK02_RS09920 (GBK02_09865) radA 2064515..2065873 (+) 1359 WP_203466519.1 DNA repair protein RadA Machinery gene
  GBK02_RS09925 (GBK02_09870) - 2065913..2068399 (+) 2487 WP_203466520.1 ABC transporter permease -
  GBK02_RS09930 (GBK02_09875) - 2068465..2068923 (+) 459 WP_239002962.1 FecR domain-containing protein -
  GBK02_RS09935 (GBK02_09880) - 2068916..2069500 (+) 585 WP_203466521.1 OmpA family protein -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 48344.78 Da        Isoelectric Point: 7.6855

>NTDB_id=392667 GBK02_RS09920 WP_203466519.1 2064515..2065873(+) (radA) [Dechloromonas sp. TW-R-39-2]
MAKAKSIYSCTECGATSPKWQGQCPGCNAWNTLVESVAEKVTGHRFESLAPTARLQNLSEIEARETERIPTGISEFDRAL
GGGLVPGGVVLIGGDPGIGKSTLLLQALAHLAESNKVLYVTGEESGEQVALRARRLSLETRKLTLMAEINLERILSTLQA
ELPQVAVIDSIQTLWSDQLSSAPGSVAQVRECSAQLTRLAKQAGITIILVGHVTKDGALAGPRVLEHIVDTVLYFEGDTH
SSFRLVRAVKNRFGAVNELGVFAMTDKGLKGVNNPSALFLSQHGQDVPGSCVMVTQEGTRPLLVEIQALVDTAHGNPRRL
TVGLDAQRLAMLLAVLHRHAGVVCFDQDVFVNAVGGVKIAEPAADLAVILSITSSLKNKALPSKLIVFGEVGLAGEVRPA
PRGQERLKEAAKLGFTRALIPEANRPKQAIPGMEVIAVRRVEEAVTRLRELD

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=392667 GBK02_RS09920 WP_203466519.1 2064515..2065873(+) (radA) [Dechloromonas sp. TW-R-39-2]
GTGGCCAAGGCGAAGTCGATTTATAGCTGCACCGAATGCGGTGCCACGAGTCCGAAATGGCAAGGCCAGTGTCCCGGCTG
TAACGCATGGAATACCCTGGTCGAGAGCGTGGCCGAGAAAGTGACCGGACATCGCTTCGAGTCACTGGCACCGACGGCCC
GGTTGCAGAATCTTTCGGAGATCGAAGCACGCGAAACCGAACGTATTCCGACTGGAATCAGCGAATTCGACCGGGCGCTG
GGCGGCGGTCTGGTACCGGGCGGCGTCGTGCTGATCGGTGGCGACCCCGGCATCGGCAAAAGCACCTTGCTGTTGCAGGC
GCTGGCTCACCTGGCCGAATCGAACAAGGTGCTTTACGTCACCGGCGAGGAATCCGGCGAGCAGGTCGCCTTGCGCGCCC
GGCGCCTGAGTCTCGAAACCCGGAAACTGACGTTGATGGCCGAGATCAATCTGGAGCGAATTCTGTCCACCCTGCAGGCC
GAGCTACCCCAGGTGGCGGTGATCGATTCGATCCAGACCTTGTGGTCCGATCAATTGTCCAGTGCACCGGGGTCGGTTGC
CCAGGTGCGCGAGTGTTCCGCACAGCTGACCCGGCTGGCCAAGCAGGCCGGCATCACGATTATTCTGGTCGGGCATGTCA
CCAAGGATGGGGCGCTGGCCGGGCCGCGCGTGCTCGAACACATCGTTGATACCGTGCTGTATTTTGAAGGCGATACGCAT
TCGAGTTTCCGCCTGGTCCGGGCTGTTAAGAACCGTTTTGGCGCGGTCAACGAACTCGGGGTCTTCGCCATGACCGACAA
GGGATTGAAAGGGGTGAACAATCCCTCGGCCCTGTTCTTGTCGCAGCATGGTCAGGATGTACCCGGCTCCTGCGTGATGG
TGACGCAGGAAGGAACGCGACCGTTGTTGGTTGAAATTCAGGCATTGGTCGATACTGCGCATGGCAATCCGCGTCGCCTG
ACTGTCGGGCTGGATGCGCAACGGCTGGCTATGTTGCTGGCGGTGCTGCATCGCCATGCCGGCGTGGTTTGCTTTGATCA
GGATGTCTTCGTCAATGCGGTCGGTGGGGTCAAGATTGCCGAGCCAGCCGCTGATTTGGCGGTGATTTTGTCAATCACAT
CTTCCTTGAAAAACAAGGCATTGCCATCGAAACTTATTGTGTTTGGTGAGGTTGGTCTAGCGGGTGAGGTGCGCCCGGCT
CCGCGTGGCCAGGAGCGTCTCAAGGAGGCTGCCAAGCTCGGCTTTACCCGTGCCTTGATTCCCGAAGCCAATCGTCCGAA
ACAGGCGATTCCCGGCATGGAAGTGATTGCCGTGCGCCGTGTTGAAGAGGCCGTGACGCGGCTGCGCGAGCTTGATTAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(355-444)

AAA domain (AAA_25)

(62-217)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.664

100

0.507
  radA Streptococcus mitis SK321

47.124

100

0.471
  radA Streptococcus pneumoniae D39

46.563

99.779

0.465
  radA Streptococcus pneumoniae TIGR4

46.563

99.779

0.465
  radA Streptococcus mitis NCTC 12261

46.563

99.779

0.465
  radA Streptococcus pneumoniae R6

46.563

99.779

0.465
  radA Streptococcus pneumoniae Rx1

46.563

99.779

0.465

Multiple sequence alignment