Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   GBK02_RS00540 Genome accession   NZ_CP045202
Coordinates   107775..108149 (-) Length   124 a.a.
NCBI ID   WP_203469252.1    Uniprot ID   -
Organism   Dechloromonas sp. TW-R-39-2     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 102775..113149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBK02_RS00525 (GBK02_00525) - 104747..106840 (-) 2094 WP_203467840.1 methyl-accepting chemotaxis protein -
  GBK02_RS00530 (GBK02_00530) - 106876..107388 (-) 513 WP_203467841.1 chemotaxis protein CheW -
  GBK02_RS00535 (GBK02_00535) - 107394..107759 (-) 366 WP_203467842.1 response regulator transcription factor -
  GBK02_RS00540 (GBK02_00540) pilG 107775..108149 (-) 375 WP_203469252.1 PleD family two-component system response regulator Regulator
  GBK02_RS00545 (GBK02_00545) - 108374..109237 (+) 864 WP_203469253.1 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase -
  GBK02_RS00550 (GBK02_00550) thiE 109227..109859 (+) 633 WP_203467843.1 thiamine phosphate synthase -
  GBK02_RS00555 (GBK02_00555) hemL 109856..111139 (+) 1284 WP_203467844.1 glutamate-1-semialdehyde 2,1-aminomutase -
  GBK02_RS00560 (GBK02_00560) sugE 111136..111474 (+) 339 WP_203467845.1 quaternary ammonium compound efflux SMR transporter SugE -
  GBK02_RS00565 (GBK02_00565) mgtE 111466..112908 (-) 1443 WP_203469254.1 magnesium transporter -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13727.84 Da        Isoelectric Point: 7.7134

>NTDB_id=392651 GBK02_RS00540 WP_203469252.1 107775..108149(-) (pilG) [Dechloromonas sp. TW-R-39-2]
MVIDDSNTIRRSAEIFLVQAGCQVVLAEDGFDALAKVADHQPSVIFCDIMMPRLDGYQTCALIKKNPRYKSTPVIMLSSK
DGLFDRVRGRMVGSSEYLTKPFTKDSLLQTVARFAFPSATESTS

Nucleotide


Download         Length: 375 bp        

>NTDB_id=392651 GBK02_RS00540 WP_203469252.1 107775..108149(-) (pilG) [Dechloromonas sp. TW-R-39-2]
ATGGTCATTGACGACAGCAACACGATACGGCGAAGCGCCGAGATTTTTCTCGTCCAGGCCGGCTGTCAGGTTGTCCTCGC
CGAAGATGGTTTCGATGCCCTGGCCAAGGTCGCCGATCACCAGCCCAGCGTTATTTTCTGCGACATCATGATGCCGCGCC
TCGATGGCTATCAGACCTGTGCGCTGATCAAGAAAAATCCCCGTTACAAATCCACCCCGGTCATCATGCTTTCTTCAAAG
GATGGCCTGTTTGACCGGGTTCGCGGCCGTATGGTCGGCTCTTCCGAATATCTGACCAAGCCCTTTACCAAGGACAGCCT
GCTGCAGACGGTCGCCAGATTTGCCTTTCCGTCCGCGACAGAATCCACTTCGTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(1-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

65.766

89.516

0.589

Multiple sequence alignment