Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   F8E20_RS16840 Genome accession   NZ_CP045193
Coordinates   3453516..3454112 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain YML0508     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3448516..3459112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F8E20_RS16825 helD 3448724..3450778 (-) 2055 WP_004224033.1 DNA helicase IV -
  F8E20_RS16830 - 3450903..3451349 (+) 447 WP_004224032.1 YccF domain-containing protein -
  F8E20_RS16835 yccS 3451367..3453502 (+) 2136 WP_002898422.1 YccS family putative transporter -
  F8E20_RS16840 sxy/tfoX 3453516..3454112 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  F8E20_RS16845 sulA 3454461..3454970 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  F8E20_RS16850 ompA 3455323..3456393 (+) 1071 WP_002898408.1 porin OmpA -
  F8E20_RS16855 matP 3456524..3456976 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  F8E20_RS16860 - 3457162..3458919 (+) 1758 WP_004147851.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=392584 F8E20_RS16840 WP_004179217.1 3453516..3454112(-) (sxy/tfoX) [Klebsiella pneumoniae strain YML0508]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=392584 F8E20_RS16840 WP_004179217.1 3453516..3454112(-) (sxy/tfoX) [Klebsiella pneumoniae strain YML0508]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment