Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   F9Y86_RS06790 Genome accession   NZ_CP045192
Coordinates   1522665..1524026 (-) Length   453 a.a.
NCBI ID   WP_073182473.1    Uniprot ID   -
Organism   Tenacibaculum mesophilum strain DSM 13764     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1517665..1529026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F9Y86_RS06775 (F9Y86_06775) arsM 1518104..1519072 (+) 969 WP_073182475.1 arsenosugar biosynthesis arsenite methyltransferase ArsM -
  F9Y86_RS06780 (F9Y86_06780) - 1519200..1520234 (+) 1035 WP_073182748.1 S66 peptidase family protein -
  F9Y86_RS06785 (F9Y86_06785) - 1520322..1522508 (+) 2187 WP_073182474.1 transglycosylase domain-containing protein -
  F9Y86_RS06790 (F9Y86_06790) radA 1522665..1524026 (-) 1362 WP_073182473.1 DNA repair protein RadA Machinery gene
  F9Y86_RS06795 (F9Y86_06795) - 1524062..1525012 (-) 951 WP_073182472.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  F9Y86_RS06800 (F9Y86_06800) panD 1525014..1525364 (-) 351 WP_028891458.1 aspartate 1-decarboxylase -
  F9Y86_RS06805 (F9Y86_06805) panC 1525453..1526301 (-) 849 WP_073182471.1 pantoate--beta-alanine ligase -
  F9Y86_RS06810 (F9Y86_06810) - 1526398..1527213 (+) 816 WP_073182470.1 glycogen/starch synthase -
  F9Y86_RS06815 (F9Y86_06815) - 1527213..1528760 (+) 1548 WP_073182469.1 DUF4270 family protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49742.23 Da        Isoelectric Point: 7.1309

>NTDB_id=392563 F9Y86_RS06790 WP_073182473.1 1522665..1524026(-) (radA) [Tenacibaculum mesophilum strain DSM 13764]
MAKTKTTFFCQNCGAQHAQWVGQCGSCKEWNTIVEEVIQKEEKRSWKSPSNTQKRIAKPLRVEDIQLNPEERFGTKNQEL
DTVLGGGLVKGAVVLLGGEPGIGKSTLLLQIALQIPQKVLYVSGEESQSQIKMRAERIEGKNPNCLILTETNTQQIFKNI
EEVQPDVLVIDSIQTLHTNTIEASPGSISQIRETSAELIKFAKETATPVLLIGHINKEGHIAGPKILEHMVDVVLQFEGD
RNHTYRILRSQKNRFGSTAELGIYEMLSDGLREVSNPSEILISKKDADLSGTAIASTLEGIRPLMIEIQALVSTAVYGTP
QRTTTGYNLKRLHMILAVLEKRAGFKLGAKDVFLNVTGGIHVDDPAIDLAVVAAILSSNQDLAINPDVCFAAEVGLAGEI
RPVSKIDQRITEAEKLGYKTFVTSKYNKITSKNNSIKLILVSKIEEAFATLFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=392563 F9Y86_RS06790 WP_073182473.1 1522665..1524026(-) (radA) [Tenacibaculum mesophilum strain DSM 13764]
ATGGCAAAAACCAAAACAACTTTTTTCTGTCAAAACTGTGGCGCGCAACACGCGCAATGGGTAGGGCAATGTGGCTCATG
TAAAGAATGGAACACTATTGTTGAAGAAGTGATTCAAAAAGAAGAAAAAAGAAGTTGGAAATCGCCATCAAACACACAAA
AAAGAATAGCGAAACCTTTACGAGTTGAAGATATTCAATTGAATCCAGAAGAGCGATTTGGCACCAAGAATCAAGAGTTA
GATACTGTTTTAGGTGGCGGATTGGTGAAAGGAGCGGTAGTGTTATTAGGCGGAGAACCAGGAATTGGTAAATCTACGTT
GTTGTTACAAATTGCTTTACAAATTCCGCAAAAAGTATTGTATGTGTCTGGAGAAGAAAGTCAGTCGCAGATAAAAATGC
GTGCTGAACGTATCGAAGGAAAAAATCCTAACTGTTTAATTCTTACTGAAACGAATACCCAACAGATTTTTAAAAATATT
GAAGAAGTTCAGCCAGATGTGTTGGTAATAGATTCTATCCAAACCTTACATACGAATACGATTGAAGCTTCTCCAGGAAG
TATTTCGCAAATACGAGAAACTTCCGCAGAACTCATCAAATTTGCGAAGGAAACAGCAACTCCCGTATTATTAATCGGGC
ATATTAATAAAGAAGGACATATTGCGGGGCCTAAGATTTTAGAGCACATGGTAGATGTGGTGTTACAGTTTGAAGGCGAC
CGAAACCATACCTACCGTATTTTACGCTCACAAAAAAATCGTTTTGGTTCTACGGCTGAATTAGGAATCTACGAAATGTT
ATCAGATGGATTGCGGGAAGTGTCGAATCCTTCTGAAATTTTAATTTCGAAAAAAGATGCTGATTTAAGTGGAACTGCGA
TTGCATCCACCTTAGAAGGTATTCGTCCGTTAATGATAGAAATTCAAGCCTTAGTTTCAACAGCGGTTTATGGAACACCA
CAAAGAACTACCACAGGATATAACTTAAAACGCTTGCATATGATTTTGGCGGTGTTAGAAAAGCGTGCAGGATTCAAGTT
AGGAGCGAAAGATGTATTTTTAAATGTAACAGGTGGAATTCATGTAGACGATCCAGCAATAGATTTAGCGGTGGTAGCAG
CGATTTTATCATCAAACCAAGATTTAGCCATCAATCCAGATGTGTGTTTTGCAGCTGAAGTTGGTTTAGCAGGCGAAATT
CGTCCTGTTTCTAAAATAGATCAACGAATAACCGAAGCTGAAAAGTTAGGGTATAAAACATTTGTGACTTCAAAATACAA
CAAGATTACTAGCAAAAATAATTCTATAAAACTGATTTTAGTGAGTAAGATTGAAGAGGCTTTTGCTACCTTATTTGCGT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(70-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(338-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.238

100

0.483
  radA Streptococcus mitis NCTC 12261

47.921

100

0.483
  radA Streptococcus pneumoniae Rx1

47.921

100

0.483
  radA Streptococcus pneumoniae D39

47.921

100

0.483
  radA Streptococcus pneumoniae R6

47.921

100

0.483
  radA Streptococcus pneumoniae TIGR4

47.921

100

0.483
  radA Streptococcus mitis SK321

47.921

100

0.483

Multiple sequence alignment