Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GAG93_RS15200 Genome accession   NZ_CP045190
Coordinates   2911077..2911706 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain NT1F31     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2906077..2916706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GAG93_RS15185 (GAG93_15580) helD 2906319..2908373 (-) 2055 WP_001295354.1 DNA helicase IV -
  GAG93_RS15190 (GAG93_15585) yccF 2908496..2908942 (+) 447 WP_001261235.1 YccF domain-containing protein -
  GAG93_RS15195 (GAG93_15590) yccS 2908952..2911114 (+) 2163 WP_000875061.1 YccS family putative transporter -
  GAG93_RS15200 (GAG93_15595) sxy/tfoX 2911077..2911706 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  GAG93_RS15205 (GAG93_15600) sulA 2911925..2912434 (+) 510 WP_001554869.1 SOS-induced cell division inhibitor SulA -
  GAG93_RS15210 (GAG93_15605) ompA 2912791..2913831 (+) 1041 WP_001400178.1 porin OmpA -
  GAG93_RS15215 (GAG93_15610) matP 2913907..2914359 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  GAG93_RS15220 (GAG93_15615) ycbZ 2914545..2916305 (+) 1761 WP_000156518.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=392551 GAG93_RS15200 WP_000839153.1 2911077..2911706(-) (sxy/tfoX) [Escherichia coli strain NT1F31]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=392551 GAG93_RS15200 WP_000839153.1 2911077..2911706(-) (sxy/tfoX) [Escherichia coli strain NT1F31]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment