Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HO399_RS08405 Genome accession   NZ_CP053599
Coordinates   1776363..1776878 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain NEBExpress     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1771363..1781878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HO399_RS08360 (HO399_08360) csrA 1771950..1772135 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  HO399_RS08390 (HO399_08390) yqaB 1773593..1774159 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  HO399_RS08395 (HO399_08395) yqaA 1774156..1774584 (+) 429 WP_001287454.1 YqaA family protein -
  HO399_RS08400 (HO399_08400) gshA 1774657..1776213 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  HO399_RS08405 (HO399_08405) luxS 1776363..1776878 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  HO399_RS08410 (HO399_08410) emrB 1776942..1778480 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  HO399_RS08415 (HO399_08415) emrA 1778497..1779669 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  HO399_RS08420 (HO399_08420) emrR 1779796..1780326 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  HO399_RS08425 (HO399_08430) ygaH 1780417..1780752 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  HO399_RS08430 (HO399_08435) ygaZ 1780742..1781479 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=392318 HO399_RS08405 WP_001130211.1 1776363..1776878(+) (luxS) [Escherichia coli strain NEBExpress]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=392318 HO399_RS08405 WP_001130211.1 1776363..1776878(+) (luxS) [Escherichia coli strain NEBExpress]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731