Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   D1010_RS02720 Genome accession   NZ_CP045143
Coordinates   565231..567027 (-) Length   598 a.a.
NCBI ID   WP_186810223.1    Uniprot ID   -
Organism   Schleiferilactobacillus harbinensis strain M1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 560231..572027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1010_RS02695 (D1010_02695) - 560502..562037 (+) 1536 WP_186810222.1 PTS transporter subunit EIIC -
  D1010_RS02700 (D1010_02700) - 562101..563042 (-) 942 WP_150393117.1 L-lactate dehydrogenase -
  D1010_RS02705 (D1010_02705) - 563240..563920 (+) 681 WP_152260176.1 metal ABC transporter ATP-binding protein -
  D1010_RS02710 (D1010_02710) - 563935..564732 (+) 798 WP_027828120.1 metal ABC transporter permease -
  D1010_RS02715 (D1010_02715) - 564729..565076 (-) 348 WP_063515714.1 DUF960 family protein -
  D1010_RS02720 (D1010_02720) pepF 565231..567027 (-) 1797 WP_186810223.1 oligoendopeptidase F Regulator
  D1010_RS02725 (D1010_02725) - 567217..568266 (+) 1050 WP_027828117.1 LCP family protein -
  D1010_RS02730 (D1010_02730) - 568423..569871 (+) 1449 WP_152261752.1 amino acid permease -
  D1010_RS02735 (D1010_02735) - 569942..570322 (+) 381 WP_152260177.1 hypothetical protein -

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 67323.99 Da        Isoelectric Point: 5.0730

>NTDB_id=392303 D1010_RS02720 WP_186810223.1 565231..567027(-) (pepF) [Schleiferilactobacillus harbinensis strain M1]
MTKQPTRDQVPEDLTWDLTKVFATDAEWEKTFAQVKTAAADLTQYVGTLGQSGAALLKGIQAILSVYRTFEKVYVYASMR
SDQDTGNAHYQSYDAQASALAAQVSAATAFMEPEILAIPEAKLEQFFIDTPQLADYRHFIEVITVKRAHVLPADQEALLA
AAEDVFSSSAQTFNVLSNSDLKLPMVKDEDGNDVQLTNGVYSTLLQSPNRDVRKGVFQGLYAAYGQYQHTFASTLAGQIK
ADNYTAQVRHYSSAREAAMARNHIPASVYDTLIEQVNAHLPLLHRYVALRKRLLKLDTVHMYDMYTPITGTPQLSYTFAE
AKQEARRALSVLGEDYLSHVDEIFNNRYIDVVENKGKRSGAYSGGAYDTPPYELLNWQDDLENLYTLVHETGHSVHSWYT
RHNQPYQYGDYPIFVAEIASTTNENILTDYLLKTQKDPAVQAYVLNHYLDGFKGTVFRQTQFAEFEHHIHESQQQGTPLT
ADSMSQFYGDLNARYYGPETAKDSEIALEWSRIPHFYYNYYVYQYSTGFAAASTLAAKITSGADGAVDRYINNFLKSGSS
RYAIDTMQSAGVDMTQADYLENAFRVFADRLDALEKLV

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=392303 D1010_RS02720 WP_186810223.1 565231..567027(-) (pepF) [Schleiferilactobacillus harbinensis strain M1]
ATCACCAAACAACCCACCCGGGACCAAGTACCTGAGGACTTAACCTGGGATTTGACCAAGGTTTTCGCCACCGATGCAGA
GTGGGAAAAGACCTTTGCCCAAGTGAAAACGGCGGCAGCTGATCTGACGCAGTACGTCGGCACGCTGGGCCAAAGCGGGG
CAGCACTGCTCAAGGGTATCCAGGCCATTCTGAGTGTCTACCGGACTTTTGAAAAAGTCTACGTCTACGCCAGCATGCGC
AGTGATCAGGACACCGGCAATGCCCATTACCAGAGCTATGATGCCCAAGCCTCGGCGCTAGCCGCTCAGGTGTCCGCCGC
AACAGCCTTCATGGAACCGGAGATTCTGGCCATCCCGGAGGCCAAGCTAGAGCAATTCTTCATCGATACCCCCCAACTGG
CTGATTATCGCCACTTCATTGAAGTGATCACGGTCAAACGGGCCCACGTGCTGCCCGCTGACCAAGAGGCGCTGCTGGCG
GCCGCGGAGGATGTCTTTTCTTCCTCTGCCCAGACTTTCAACGTCCTGAGCAACTCCGATCTGAAGCTGCCCATGGTCAA
AGATGAGGACGGCAATGATGTTCAGTTGACCAACGGCGTCTACAGCACCTTGCTGCAATCACCTAATCGGGACGTGCGCA
AAGGCGTCTTCCAGGGCCTGTATGCCGCGTATGGCCAATATCAGCACACGTTTGCCAGCACGCTGGCCGGCCAGATCAAG
GCCGATAACTATACCGCCCAAGTCCGCCACTACAGCAGCGCCCGGGAAGCAGCCATGGCCCGCAACCATATTCCGGCCAG
TGTGTATGACACCTTGATCGAACAAGTCAACGCCCACCTGCCCCTGCTCCACCGCTATGTGGCACTGCGCAAGCGGCTGC
TGAAGCTCGACACCGTCCACATGTATGACATGTATACTCCGATCACCGGCACGCCCCAGCTCAGCTACACCTTTGCCGAA
GCCAAGCAGGAAGCCCGCCGCGCCTTGAGTGTGTTGGGAGAGGACTACTTGAGCCATGTCGACGAGATTTTCAACAATCG
CTACATTGACGTGGTCGAAAATAAGGGCAAGCGCTCCGGAGCCTATTCCGGCGGTGCCTACGACACACCGCCTTATGAAC
TGCTCAATTGGCAGGACGATCTGGAGAACCTGTACACCCTGGTCCACGAAACCGGCCACAGTGTTCATTCCTGGTATACG
CGGCACAACCAGCCTTATCAGTACGGTGATTATCCAATCTTCGTCGCGGAAATTGCCTCCACTACAAACGAAAACATTCT
GACGGATTACTTATTGAAGACACAAAAGGATCCTGCCGTTCAAGCCTATGTCCTGAACCACTATTTGGACGGCTTCAAGG
GCACCGTCTTCCGCCAGACCCAGTTTGCAGAATTCGAGCACCATATCCACGAATCCCAGCAGCAGGGCACGCCGCTGACT
GCCGACAGTATGAGTCAGTTCTACGGCGACCTGAATGCCCGCTACTACGGCCCTGAGACCGCCAAGGATTCCGAAATTGC
CTTGGAGTGGAGCCGAATCCCCCACTTCTACTACAATTACTACGTCTATCAATACTCAACCGGCTTCGCGGCGGCATCCA
CTCTGGCCGCCAAGATCACCAGCGGCGCTGATGGCGCGGTGGATCGCTACATCAACAACTTCTTGAAGAGCGGTTCCTCC
CGCTATGCCATCGACACGATGCAAAGCGCCGGCGTTGATATGACCCAGGCCGACTACCTGGAGAACGCCTTCCGCGTCTT
CGCTGACCGGCTGGATGCTTTGGAAAAATTAGTCTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(114-182)

Peptidase family M3 (Peptidase_M3)

(204-585)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

54.054

98.997

0.535

Multiple sequence alignment