Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   GB851_RS06465 Genome accession   NZ_CP045141
Coordinates   1263016..1263546 (-) Length   176 a.a.
NCBI ID   WP_003785826.1    Uniprot ID   A0AAX2J3W4
Organism   Kingella kingae strain F41215CHC     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1258016..1268546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GB851_RS06445 (GB851_06610) - 1258794..1259210 (-) 417 WP_164538207.1 ProQ/FINO family protein -
  GB851_RS06450 (GB851_06615) aroB 1259229..1260311 (-) 1083 WP_003789801.1 3-dehydroquinate synthase -
  GB851_RS06455 (GB851_06620) - 1260311..1260823 (-) 513 WP_003789800.1 shikimate kinase -
  GB851_RS06460 (GB851_06625) pilQ 1260880..1262982 (-) 2103 WP_003789799.1 type IV pilus secretin PilQ Machinery gene
  GB851_RS06465 (GB851_06630) pilP 1263016..1263546 (-) 531 WP_003785826.1 pilus assembly protein PilP Machinery gene
  GB851_RS06470 (GB851_06635) pilO 1263580..1264203 (-) 624 WP_003785825.1 type 4a pilus biogenesis protein PilO -
  GB851_RS06475 (GB851_06640) - 1264206..1264865 (-) 660 WP_026036228.1 PilN domain-containing protein -
  GB851_RS06480 (GB851_06645) pilM 1264867..1265970 (-) 1104 WP_003789795.1 type IV pilus assembly protein PilM -
  GB851_RS06485 (GB851_06650) - 1266112..1268484 (+) 2373 WP_164538208.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19408.16 Da        Isoelectric Point: 5.2810

>NTDB_id=392286 GB851_RS06465 WP_003785826.1 1263016..1263546(-) (pilP) [Kingella kingae strain F41215CHC]
MKVKLFLMSALVLAGCSEQYGDLQEWMSQARAEAKTKVRPVEPLAPIEPVTYFAPQITGPNAFNMQRMKAAFQNGNAPDL
NRSKELLENYSLENLRYVGSIGTPGSLSALIEIQVNGEPHVYTVKQGNYLGQNFGRISKITADKIDLVETVEDTYGNWVN
RPAELLPMTDAAATAK

Nucleotide


Download         Length: 531 bp        

>NTDB_id=392286 GB851_RS06465 WP_003785826.1 1263016..1263546(-) (pilP) [Kingella kingae strain F41215CHC]
ATGAAAGTTAAATTATTTTTGATGTCGGCACTAGTGCTGGCAGGCTGTTCTGAACAGTATGGGGATTTGCAAGAGTGGAT
GAGTCAAGCAAGAGCAGAGGCAAAAACAAAAGTTCGCCCTGTTGAGCCTTTGGCACCGATTGAACCCGTTACTTATTTTG
CACCTCAAATTACAGGGCCGAATGCGTTTAATATGCAACGTATGAAAGCAGCTTTCCAAAATGGTAATGCGCCAGATTTG
AACCGAAGTAAAGAATTGCTAGAAAATTATAGTCTAGAGAATTTACGGTATGTTGGTTCAATTGGTACACCTGGTTCATT
ATCGGCTTTGATTGAAATCCAAGTAAATGGAGAGCCACACGTTTACACAGTGAAGCAAGGCAATTATTTGGGACAAAATT
TTGGTCGTATCTCTAAAATTACAGCGGATAAAATTGATTTGGTTGAAACTGTAGAAGATACGTATGGAAATTGGGTCAAT
CGACCAGCAGAGTTGCTGCCTATGACAGATGCAGCTGCTACTGCTAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

51.497

94.886

0.489

Multiple sequence alignment